(gh-181) Add automatic imagej package following migration

Maintanence for the package was migated from anthonymastrean but there
was no source available for the imagej package.  The package has been
added and built from scratch inline with repository standards.

automatic/imagej/README.md

@@ -0,0 +1,54 @@
+# [<img src="https://cdn.jsdelivr.net/gh/dgalbraith/chocolatey-packages@a306a1daa4f210fa0a5421f2a3c996804629256a/icons/imagej.png" width="48" height="48" />ImageJ - Image Processing and Analysis in Java](https://chocolatey.org/packages/imagej)
+
+[![Software license](https://img.shields.io/badge/License-Public%20Domain-brightgreen.svg)](https://imagej.nih.gov/ij/disclaimer.html)
+[![Maintenance status](https://img.shields.io/badge/maintained%3F-yes-green.svg)](https://gitHub.com/dgalbraith/chocolatey-packages/graphs/commit-activity)
+[![AppVeyor build](https://img.shields.io/appveyor/ci/dgalbraith/chocolatey-packages)](https://ci.appveyor.com/project/dgalbraith/chocolatey-packages)
+[![Software version](https://img.shields.io/badge/Source-v1.52-blue)](http://wsr.imagej.net/distros/win/ij152-win-java8.zip)
+[![Chocolatey package version](https://img.shields.io/chocolatey/v/imagej?label=Chocolatey)](https://chocolatey.org/packages/imagej)
+
+Public domain software for processing and analyzing scientific images – a.k.a. ImageJ 1.x.
+
+## Features
+
+* Display, edit, analyze, process, save, and print 8-bit color and grayscale, 16-bit integer, and 32-bit
+floating point images
+
+* Read many image file formats, including TIFF, PNG, GIF, JPEG, BMP, DICOM, and FITS, as well as raw formats
+
+* Supports image stacks, a series of images that share a single window, and it is multithreaded, so
+time-consuming operations can be performed in parallel on multi-CPU hardware
+
+* Calculate area and pixel value statistics of user-defined selections and intensity-thresholded objects
+
+* Measure distances and angles
+
+* Create density histograms and line profile plots
+
+* Supports standard image processing functions such as logical and arithmetical operations between images,
+contrast manipulation, convolution, Fourier analysis, sharpening, smoothing, edge detection, and median
+filtering
+
+* Geometric transformations such as scaling, rotation, and flips
+
+* Supports any number of images simultaneously, limited only by available memory
+
+![screenshot](https://cdn.jsdelivr.net/gh/dgalbraith/chocolatey-packages@3d96ff972ea781c5e7ddf915b56f74c7b4baf5a4/automatic/imagej/screenshot.png)
+
+## Package Parameters
+
+The following package parameter can be set:
+
+* `/AddToDesktop`   - add a desktop shortcut for ImageJ. By default the shortcut will be added for all users
+* `/AddToStartMenu` - add a start menu entry for ImageJ. By default the shortcut will be added for all users
+
+eg. `choco install -y imagej --package-parameters="/AddToDesktop /AddToStartMenu"`
+
+* `/User`           - where the user parameter is specified any shortcuts created (`/AddToDesktop`, `/AddToStartMenu`)
+will only be added for the current user
+
+eg. `choco install -y imagej --package-parameters="/AddToDesktop /AddToStartMenu /User"`
+
+## Notes
+
+* This package is automatically updated using the [Chocolatey Automatic Package Update Model (AU)](https://github.com/majkinetor/au/blob/master/README.md).
+If you find it is out of date by more than a day or two, please contact the maintainer(s) and let them know the package is no longer updating correctly.

automatic/imagej/imagej.nuspec

@@ -0,0 +1,80 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!-- Do not remove this test for UTF-8: if “Ω” doesn’t appear as greek uppercase omega letter enclosed in quotation marks, you should use an editor that supports UTF-8, not this one. -->
+<package xmlns="http://schemas.microsoft.com/packaging/2015/06/nuspec.xsd">
+  <metadata>
+    <id>imagej</id>
+    <version>1.52</version>
+    <packageSourceUrl>https://github.com/dgalbraith/chocolatey-packages/tree/master/automatic/imagej</packageSourceUrl>
+    <owners>dgalbraith</owners>
+    <title>ImageJ - Image Processing and Analysis in Java</title>
+    <authors>Wayne Rasband</authors>
+    <projectUrl>https://imagej.nih.gov/ij</projectUrl>
+    <iconUrl>https://cdn.jsdelivr.net/gh/dgalbraith/chocolatey-packages@a306a1daa4f210fa0a5421f2a3c996804629256a/icons/imagej.png</iconUrl>
+    <copyright>ImageJ is dedicated to the public domain</copyright>
+    <licenseUrl>https://imagej.nih.gov/ij/disclaimer.html</licenseUrl>
+    <requireLicenseAcceptance>false</requireLicenseAcceptance>
+    <projectSourceUrl>https://github.com/imagej/ImageJ</projectSourceUrl>
+    <docsUrl>https://imagej.nih.gov/ij/docs/index.html</docsUrl>
+    <mailingListUrl>https://imagej.nih.gov/ij/list.html</mailingListUrl>
+    <bugTrackerUrl>https://github.com/imagej/ImageJ/issues</bugTrackerUrl>
+    <tags>imagej computer-vision image-analysis image-processing</tags>
+    <summary>Image processing and analysis in Java</summary>
+    <description><![CDATA[
+
+Public domain software for processing and analyzing scientific images – a.k.a. ImageJ 1.x.
+
+## Features
+
+* Display, edit, analyze, process, save, and print 8-bit color and grayscale, 16-bit integer, and 32-bit
+floating point images
+
+* Read many image file formats, including TIFF, PNG, GIF, JPEG, BMP, DICOM, and FITS, as well as raw formats
+
+* Supports image stacks, a series of images that share a single window, and it is multithreaded, so
+time-consuming operations can be performed in parallel on multi-CPU hardware
+
+* Calculate area and pixel value statistics of user-defined selections and intensity-thresholded objects
+
+* Measure distances and angles
+
+* Create density histograms and line profile plots
+
+* Supports standard image processing functions such as logical and arithmetical operations between images,
+contrast manipulation, convolution, Fourier analysis, sharpening, smoothing, edge detection, and median
+filtering
+
+* Geometric transformations such as scaling, rotation, and flips
+
+* Supports any number of images simultaneously, limited only by available memory
+
+![screenshot](https://cdn.jsdelivr.net/gh/dgalbraith/chocolatey-packages@3d96ff972ea781c5e7ddf915b56f74c7b4baf5a4/automatic/imagej/screenshot.png)
+
+## Package Parameters
+
+The following package parameter can be set:
+
+* `/AddToDesktop`   - add a desktop shortcut for ImageJ. By default the shortcut will be added for all users
+* `/AddToStartMenu` - add a start menu entry for ImageJ. By default the shortcut will be added for all users
+
+eg. `choco install -y imagej --package-parameters="/AddToDesktop /AddToStartMenu"`
+
+* `/User`           - where the user parameter is specified any shortcuts created (`/AddToDesktop`, `/AddToStartMenu`)
+will only be added for the current user
+
+eg. `choco install -y imagej --package-parameters="/AddToDesktop /AddToStartMenu /User"`
+
+## Notes
+
+* This package is automatically updated using the [Chocolatey Automatic Package Update Model (AU)](https://github.com/majkinetor/au/blob/master/README.md).
+If you find it is out of date by more than a day or two, please contact the maintainer(s) and let them know the package is no longer updating correctly.
+
+]]>
+    </description>
+    <releaseNotes>https://imagej.nih.gov/ij/notes.html</releaseNotes>
+    <dependencies />
+  </metadata>
+  <files>
+    <file src="legal\**" target="legal" />
+    <file src="tools\**" target="tools" />
+  </files>
+</package>

automatic/imagej/legal/LICENSE.txt

@@ -0,0 +1,9 @@
+ImageJ Disclaimer
+
+ImageJ was developed at the National Institutes of Health by an employee of the
+Federal Government in the course of his official duties. Pursuant to Title 17,
+Section 105 of the United States Code, this software is not subject to
+copyright protection and is in the public domain. ImageJ is an experimental
+system. NIH assumes no responsibility whatsoever for its use by other parties,
+and makes no guarantees, expressed or implied, about its quality, reliability,
+or any other characteristic.

automatic/imagej/legal/VERIFICATION.txt

@@ -0,0 +1,28 @@
+VERIFICATION
+
+Verification is intended to assist the Chocolatey moderators and community
+in verifying that this package's contents are trustworthy.
+
+The application has been downloaded from the official distribution and can
+be verified by:
+
+1. Go to the binary distribution page
+
+  http://wsr.imagej.net/distros/win/
+
+and download the installer ij152-win-java8.zip using the relevant links in the
+asset section of the distribution page.
+
+Alternatively the distribution can be downloaded directly from
+
+  http://wsr.imagej.net/distros/win/ij152-win-java8.zip
+
+2. The archive can be validated by comparing checksums
+  - Use powershell function 'Get-Filehash' - Get-Filehash ij152-win-java8.zip
+  - Use chocolatey utility 'checksum.exe' - checksum -t sha256 -f ij152-win-java8.zip
+
+  File:         ij152-win-java8.zip
+  ChecksumType: sha256
+  Checksum:     ACE9FAEDCB0BCCD9EE821A956CE52CAB295F781E70D7F62F0F6807EA98999ED9
+
+  Contents of file LICENSE.txt is obtained from https://imagej.nih.gov/ij/disclaimer.html

automatic/imagej/tools/chocolateyBeforeModify.ps1

@@ -0,0 +1,20 @@
+$ErrorActionPreference = 'Stop'
+
+$link            = 'imagej.lnk'
+$desktop         = [Environment]::GetFolderPath('Desktop')
+$commonDesktop   = [Environment]::GetFolderPath('CommonDesktopDirectory')
+$startMenu       = [Environment]::GetFolderPath('StartMenu')
+$commonStartMenu = [Environment]::GetFolderPath('CommonStartMenu')
+
+$paths = @(
+  (Join-Path $desktop $link),
+  (Join-Path $commonDesktop $link),
+  (Join-Path $startMenu $link),
+  (Join-Path $commonStartMenu $link)
+)
+
+$paths.GetEnumerator() | ForEach-Object {
+  if (Test-Path -Path $_) {
+    Remove-Item $_ -ErrorAction SilentlyContinue -Force | Out-Null
+  }
+}

automatic/imagej/tools/chocolateyInstall.ps1

@@ -0,0 +1,47 @@
+$ErrorActionPreference = 'Stop'
+
+$toolsDir   = (Split-Path -parent $MyInvocation.MyCommand.Definition)
+$archive    = Join-Path $toolsDir 'ij152-win-java8.zip'
+$installDir = Get-ToolsLocation
+
+$packageArgs = @{
+  PackageName    = $env:ChocolateyPackageName
+  FileFullPath   = $archive
+  Destination    = $installDir
+}
+
+Get-ChocolateyUnzip @packageArgs
+
+$executable = Get-ChildItem $installDir -include ImageJ.exe -recurse
+
+$pp = Get-PackageParameters
+
+if ($pp.AddToDesktop) {
+  if ($pp.User) {
+    $desktopPath = [Environment]::GetFolderPath('Desktop')
+  } else {
+    $desktopPath = [Environment]::GetFolderPath('CommonDesktopDirectory')
+  }
+
+  $shortcutPath = Join-Path $desktopPath 'imagej.lnk'
+
+  Install-ChocolateyShortcut -ShortcutFilePath $shortcutPath -TargetPath $executable
+
+  Write-Host("Added {0} desktop shortcut pointed at {1}" -f $shortcutPath, $executable)
+}
+
+if ($pp.AddToStartMenu) {
+  if ($pp.User) {
+    $startMenuPath = [Environment]::GetFolderPath('StartMenu')
+  } else {
+    $startMenuPath = [Environment]::GetFolderPath('CommonStartMenu')
+  }
+
+  $shortcutPath = Join-Path $startMenuPath 'imagej.lnk'
+
+  Install-ChocolateyShortcut -ShortcutFilePath $shortcutPath -TargetPath $executable
+
+  Write-Host("Added {0} start menu entry pointed at {1}" -f $shortcutPath, $executable)
+}
+
+Install-Binfile -Name 'imagej' -Path $executable -UseStart

automatic/imagej/tools/chocolateyUninstall.ps1

@@ -0,0 +1,5 @@
+$ErrorActionPreference = 'Stop'
+
+Uninstall-Binfile -name 'imagej' -path 'imagej.exe'
+
+Uninstall-ChocolateyZipPackage 'imagej' 'ij152-win-java8.zip'

automatic/imagej/update.ps1

@@ -0,0 +1,54 @@
+import-module au
+
+$ErrorActionPreference = 'Stop'
+
+$releases = "https://imagej.nih.gov/ij/download.html"
+
+$reArchive    = "(?<=\/|\s|')(?<Filename>(ij.+win.+zip))"
+$reChecksum   = '(?<=Checksum:\s*)((?<Checksum>([^\s].+)))'
+$reRawVersion = '(?<RawVersion>(?<=ij)(?<Major>[\d]{1})(?<Minor>[\d]{2}))'
+$reVersion    = '(?<=v)(?<Version>([\d]{1}\.[\d]{2}\.?[\d]*))'
+
+
+function global:au_BeforeUpdate {
+  Get-RemoteFiles -Purge -NoSuffix
+}
+
+function global:au_SearchReplace {
+  @{
+    ".\README.md" = @{
+      "$($reVersion)" = "$($Latest.Version)"
+    }
+
+    ".\legal\VERIFICATION.txt" = @{
+      "$($reArchive)"  = "$($Latest.FileName64)"
+      "$($reChecksum)" = "$($Latest.Checksum64)"
+    }
+
+    ".\tools\chocolateyInstall.ps1" = @{
+      "$($reArchive)" = "$($Latest.FileName64)"
+    }
+
+    ".\tools\chocolateyUninstall.ps1" = @{
+      "$($reArchive)" = "$($Latest.FileName64)"
+    }
+  }
+}
+
+function global:au_GetLatest {
+  $downloadPage = Invoke-WebRequest -UseBasicParsing -Uri $releases
+
+  $url64      = $downloadPage.links | where-object href -match $reArchive | select-object -expand href
+  $fileName64 = $url64 -split '/' | select-object -last 1
+
+  $version = $url64 -match $reRawVersion | foreach-object { '{0}.{1}' -f $Matches.Major, $Matches.Minor }
+
+  return @{
+    Url64      = $url64
+    FileName64 = $fileName64
+    FileType   = 'zip'
+    Version    = $version
+  }
+}
+
+update -ChecksumFor none -NoReadme