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<section id="built-with-empirical-gallery">
<h1>Built With Empirical Gallery<a class="headerlink" href="#built-with-empirical-gallery" title="Link to this heading"></a></h1>
<p>This listing showcases web tools built using Empirical. Put in a PR or
raise an issue to have <em>your</em> project featured!</p>
<ul class="simple">
<li><p><a class="reference external" href="https://devosoft.github.io/dynamic-word/">Choose Your Words!</a>
<a class="reference external" href="https://github.com/devosoft/dynamic-word">[source]</a></p>
<ul>
<li><p>A pedagogical example of dynamic programming.</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://lalejini.com/my_empirical_examples/simple_physics_example/web/example.html">circle replicators with simple physics
example</a>
<a class="reference external" href="https://github.com/amlalejini/my_empirical_examples/tree/master/simple_physics_example">[source]</a></p>
<ul>
<li><p>interactive web demo of Empirical’s circle physics with
‘circle organisms’ eating nutritious ‘circle food’ in order
to self-replicate</p></li>
<li><p>WARNING: Built using a 2017 version of Empirical; source may be
out of date with current version of Empirical.</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://mmore500.github.io/dishtiny">dishtiny web viewer</a>
<a class="reference external" href="https://github.com/mmore500/dishtiny">[source]</a></p>
<ul>
<li><p>interactive web demo of an artificial life platform built to
study major transitions in evolution</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://emilydolson.github.io/ecology_of_evolutionary_computation/web/interaction_networks.html">ecology of evolutionary
computation</a>
<a class="reference external" href="https://github.com/emilydolson/ecology_of_evolutionary_computation">[source]</a></p>
<ul>
<li><p>interactive exploration of interaction networks in evolutionary
computation under different selection schemes</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://devosoft.github.io/Evoke">Evoke</a>
<a class="reference external" href="https://github.com/devosoft/Evoke">[source]</a></p>
<ul>
<li><p>evolving cells in a 2D physics environment that can link
together like Snowflake Yeast</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://lalejini.com/my_empirical_examples/KMeansClusteringExample/web/kmeans_clustering.html">kmeans clustering
example</a>
<a class="reference external" href="https://github.com/amlalejini/my_empirical_examples/tree/master/KMeansClusteringExample">[source]</a></p>
<ul>
<li><p>interactive kmeans clustering demonstration</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://emilydolson.github.io/visualizations/spatial_lineage/LineageViz.html">spatial lineage
visualization</a>
<a class="reference external" href="https://github.com/emilydolson/visualizations/">[source]</a></p>
<ul>
<li><p>a phylogeny color-coded by each individual’s position in the
world, demonstrating the spatial dynamics of an evolving
population</p></li>
</ul>
</li>
<li><p><a class="reference external" href="http://emilydolson.github.io/memic_model/web/memic_model.html">Model of cancer evolution on an oxygen
gradient</a>
<a class="reference external" href="https://github.com/emilydolson/memic_model/">[source]</a></p>
<ul>
<li><p>A companion model to a series of wet lab experiments on cancer
evolution in spatially heterogenous environments</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://emilydolson.github.io/genomic_stability_model/web/genomic_stability_model.html">Model of evolution with varying genomic
instability</a>
<a class="reference external" href="https://github.com/emilydolson/genomic_stability_model/">[source]</a></p>
<ul>
<li><p>This model was built in a day during the 2019 [IMO
workshop](<a class="reference external" href="http://psoc.moffitt.org/education/psoc-annual-workshop/">http://psoc.moffitt.org/education/psoc-annual-workshop/</a>)
to identify the parameter ranges under which it might be
possible to treat cancer by altering genomic stability.</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://lalejini.com/Aagos/web/Aagos.html">A.A.G.O.S.</a>
<a class="reference external" href="https://github.com/amlalejini/Aagos/">[source]</a></p>
<ul>
<li><p>An interactive artificial life model that demonstrates (1) how
changing environments can promote the evolution of modular
genetic architectures and (2) how high mutation rates can
promote the evolution of more compact architectures (more
goverlapping genes).</p></li>
</ul>
</li>
<li><p><a class="reference external" href="https://anyaevostinar.github.io/SymbulationEmp/web/symbulation.html">Symbulation</a>
<a class="reference external" href="https://github.com/anyaevostinar/SymbulationEmp">[source]</a></p>
<ul>
<li><p>An interactive artificial life model focused on the evolution of
symbiosis between parasitism to mutualism. Also features a game
to recreate major results from published work.</p></li>
</ul>
</li>
</ul>
</section>


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