Putting together a draft paper for JOSS #1261
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| name: CI | |
| on: | |
| push: | |
| branches: [ master, dev ] | |
| pull_request: | |
| branches: | |
| - '**' | |
| schedule: | |
| - cron: '0 0 * * 0' | |
| workflow_dispatch: | |
| jobs: | |
| tidy: | |
| name: Enforce Tidyness | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| - run: sudo apt-get update -qq | |
| - run: sudo apt-get install -qq rename python3-sphinx | |
| - run: ./ci/test_tidy.sh | |
| test-macos-tidy: | |
| name: Test Tidy Enforcement on macOS | |
| runs-on: macos-11 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # sometimes checkout action doesn't result in clean directory? | |
| fetch-depth: 0 | |
| ref: ${{ github.event.pull_request.head.sha || github.ref }} | |
| submodules: 'recursive' | |
| - run: git status --ignored | |
| - run: brew install coreutils findutils gnu-sed gawk grep rename sphinx-doc | |
| # adapted from https://stackoverflow.com/a/42878119 | |
| - run: brew link sphinx-doc --force | |
| # updates PATH to use Homebrew-installed tools first | |
| # see https://docs.github.com/en/actions/using-workflows/workflow-commands-for-github-actions#adding-a-system-path | |
| - run: echo "/usr/local/bin:$PATH" > $GITHUB_PATH | |
| - run: echo $PATH | |
| - run: ./ci/test_tidy.sh | |
| test: | |
| name: Tests | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| cxx: [clang++, g++] | |
| test-set: | |
| - test-native-regular | |
| - test-native-fulldebug | |
| - test-native-opt | |
| - test-examples | |
| - test-demos | |
| # - test-cookiecutter | |
| env: | |
| CXX: ${{ matrix.cxx }} | |
| TEST_SET: ${{ matrix.test-set }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| - name: Set up GCC | |
| uses: egor-tensin/setup-gcc@v1 | |
| with: | |
| version: 11 | |
| - name: Set up clang | |
| uses: egor-tensin/setup-clang@v1 | |
| with: | |
| version: 15 | |
| - run: sudo apt-get update -qq | |
| - run: sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test | |
| - run: sudo apt-get update -qq | |
| - run: sudo apt-get install -qq cmake build-essential python3-pip python3-virtualenv nodejs tar gzip libpthread-stubs0-dev libc6-dbg gdb | |
| - run: git fetch origin master:refs/remotes/origin/master | |
| - run: make install-test-dependencies | |
| - run: ${CXX} --version | |
| - run: | | |
| source third-party/emsdk/emsdk_env.sh | |
| make ${TEST_SET} CXX=${CXX} | |
| test-web: | |
| name: Web Tests | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| - name: Set up GCC | |
| uses: egor-tensin/setup-gcc@v1 | |
| with: | |
| version: 11 | |
| - run: sudo apt-get update -qq | |
| - run: sudo apt-get install -qq cmake build-essential python3-pip python3-virtualenv nodejs tar gzip libpthread-stubs0-dev libc6-dbg gdb | |
| - run: make install-test-dependencies | |
| - name: Run headless test | |
| uses: GabrielBB/xvfb-action@v1 | |
| with: | |
| run: make test-web | |
| test-coverage: | |
| name: Measure Test Coverage | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Set up clang | |
| uses: egor-tensin/setup-clang@v1 | |
| with: | |
| version: 15 | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| - run: sudo apt-get update -qq | |
| - run: sudo apt-get install cmake build-essential python3-virtualenv python3-pip nodejs tar gzip clang llvm-dev libclang-dev | |
| - run: git fetch origin master:refs/remotes/origin/master | |
| - run: make install-test-dependencies | |
| - run: export CXX=clang++ && make install-coverage-dependencies | |
| - run: export CXX=clang++ && make coverage | |
| - run: curl -s https://codecov.io/bash | bash | |
| # adapted from https://docs.github.com/en/packages/managing-github-packages-using-github-actions-workflows/publishing-and-installing-a-package-with-github-actions#publishing-a-package-using-an-action | |
| build-container: | |
| name: Build Docker Image | |
| runs-on: ubuntu-22.04 | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: ${{ github.repository }} | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: 'recursive' | |
| - name: Log in to GitHub Container Registry | |
| uses: docker/login-action@65b78e6e13532edd9afa3aa52ac7964289d1a9c1 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker | |
| id: meta | |
| uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| tags: type=raw,value=ACTIONS_BUILD_${{ github.run_number }} | |
| - name: Push to GHCR | |
| uses: docker/build-push-action@f2a1d5e99d037542a71f64918e516c093c6f3fc4 | |
| with: | |
| context: . | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| test-documentation: | |
| name: Test Documentation Build | |
| runs-on: ubuntu-22.04 | |
| needs: build-container | |
| container: | |
| image: ghcr.io/devosoft/empirical:ACTIONS_BUILD_${{ github.run_number }} | |
| # github actions requires root to access mounted volumes | |
| options: --user root | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| - run: doxygen | |
| - run: cd doc && python make_md.py | |
| - run: cd doc && make html | ./headtail.sh | |
| - run: cd doc && make coverage | |
| - run: ls doc/ && ls doc/_build | |
| - run: cd doc && python parse_documentation_coverage.py _build/doc-coverage.json >> doc-coverage.json | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: doc-coverage | |
| path: doc/doc-coverage.json | |
| deploy-documentation-coverage: | |
| name: Deploy Documentation Coverage | |
| runs-on: ubuntu-22.04 | |
| if: github.ref == 'refs/heads/master' | |
| needs: test-documentation | |
| steps: | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: doc-coverage | |
| path: data | |
| - uses: sylvanld/action-storage@v1 | |
| with: | |
| src: data/doc-coverage.json | |
| dst: data/doc-coverage.json | |
| paper: | |
| runs-on: ubuntu-latest | |
| name: Paper Draft | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Build draft PDF | |
| uses: openjournals/openjournals-draft-action@master | |
| with: | |
| journal: joss | |
| # This should be the path to the paper within your repo. | |
| paper-path: paper.md | |
| - name: Upload | |
| uses: actions/upload-artifact@v1 | |
| with: | |
| name: paper | |
| # This is the output path where Pandoc will write the compiled | |
| # PDF. Note, this should be the same directory as the input | |
| # paper.md | |
| path: paper.pdf | |
| deploy-container: | |
| name: Deploy to DockerHub | |
| runs-on: ubuntu-22.04 | |
| permissions: | |
| contents: read | |
| packages: write | |
| if: github.ref == 'refs/heads/master' | |
| needs: | |
| - tidy | |
| - test | |
| - test-web | |
| - test-coverage | |
| - test-documentation | |
| - test-macos-tidy | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: 'recursive' | |
| - name: Push to Docker Hub | |
| uses: docker/build-push-action@v1 | |
| with: | |
| push: true | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| repository: devosoft/empirical | |
| tag_with_ref: true |