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Updated readme.
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tobiasrausch committed Jan 27, 2014
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Expand Up @@ -50,7 +50,7 @@ Running DELLY
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DELLY just needs one bam file for every sample and the reference genome to identify split-reads. The output is in [vcf](http://vcftools.sourceforge.net/) format.
The SV type can be DEL, DUP, INV or JMP for deletions, tandem duplications, inversions and translocations, respectively.
The SV type can be DEL, DUP, INV or TRA for deletions, tandem duplications, inversions and translocations, respectively.

`./src/delly -t DEL -o del.vcf -g <ref.fa> <sample1.sort.bam> ... <sampleN.sort.bam>`

Expand All @@ -73,9 +73,6 @@ There are also external packages that consume VCF files with per-sample genotype

FAQ
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* What about translocations?
Not yet supported in DELLY v0.1.2. Please use the old single sample DELLY version available [here](http://www.embl.de/~rausch/delly.html).

* What is the smallest SV size DELLY can call?
This depends on the sharpness of the insert size distribution. For an insert size of 200-300bp with a 20-30bp standard deviation, DELLY starts to call reliable SVs >=300bp.

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