This repository includes the scripts for performing the isomiR quantification and their profiles analysis in the Final Degree Project:
MIRFLOWZ: miRNA isoforms quantification and profiles in breast cancer.
This directory holds the individual scripts embed in the MIRFLOWZ workflow,
along with their unit tests. During the features addition and refactoring of
the pipeline, several rules were added. To see the whole project along with
the code modifications I made, refer to the MIRFLOWZ repository.
Other project-related codes can be found in the same repository under the branch
mirna_accounting and in the oligomap repository. The former, was
build from a C++ script as a means to construct its Bioconda
package.
NOTE:
MIRFLOWZis a work-in-progress. Although the workflow is functional, there are things yet to be optimized and implemented.
This directory includes the bash scripts used to turn the sample files into
the required format for the workflow.
This directory will include the R script used in the expression analysis
along with a script with the codes used for the different plots used in both reports.