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fix: fix PyTorch model extension in simplify #1596

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merged 4 commits into from
Jul 19, 2024

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@njzjz njzjz commented Jul 18, 2024

Summary by CodeRabbit

  • Bug Fixes

    • Improved model file search logic to dynamically construct file patterns, ensuring better compatibility with different model suffixes.
    • Added an assertion to ensure at least one model file is found, providing clearer error messaging when no models are present.
  • Tests

    • Enhanced test setup by generating fake model files, improving robustness and reliability of tests.

@njzjz njzjz changed the base branch from master to devel July 18, 2024 19:26
@njzjz njzjz changed the title fix simplify pt fix: fix PyTorch model extension in simplify Jul 18, 2024
@njzjz njzjz requested a review from wanghan-iapcm July 18, 2024 19:26
Signed-off-by: Jinzhe Zeng <[email protected]>
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coderabbitai bot commented Jul 18, 2024

Walkthrough

Walkthrough

This update enhances the run_model_devi function in simplify.py by dynamically constructing file patterns for model files based on a suffix derived from the jdata parameter. It also includes an assertion to ensure model files are found, improving error handling. Additionally, the related test setup in tests/simplify/test_run_model_devi.py has been updated to generate fake model files for testing purposes.

Changes

File Change Summary
dpgen/simplify/simplify.py Updated run_model_devi to dynamically construct file patterns using a suffix and added an assertion.
tests/simplify/test_run_model_devi.py Enhanced setUp method of TestOneH5 class to generate fake model files for testing.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant run_model_devi
    participant _get_model_suffix
    participant FileSystem

    User->>run_model_devi: Call with iter_index, jdata, mdata
    run_model_devi->>_get_model_suffix: Retrieve suffix from jdata
    _get_model_suffix-->>run_model_devi: Return suffix
    run_model_devi->>FileSystem: Search for files with pattern "graph*{suffix}"
    FileSystem-->>run_model_devi: Return list of model files
    run_model_devi->>run_model_devi: Assert length of model files > 0
    run_model_devi-->>User: Continue processing or raise error
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codecov bot commented Jul 18, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 49.52%. Comparing base (3a1ed00) to head (d5cc8f8).
Report is 22 commits behind head on devel.

Additional details and impacted files
@@            Coverage Diff             @@
##            devel    #1596      +/-   ##
==========================================
+ Coverage   49.51%   49.52%   +0.01%     
==========================================
  Files          83       83              
  Lines       14870    14872       +2     
==========================================
+ Hits         7363     7366       +3     
+ Misses       7507     7506       -1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

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njzjz commented Jul 18, 2024

Fixed the RTD build in #1597.

@wanghan-iapcm wanghan-iapcm enabled auto-merge (squash) July 19, 2024 14:41
@wanghan-iapcm wanghan-iapcm merged commit b309304 into deepmodeling:devel Jul 19, 2024
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2 participants