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name: Macos Tests | ||
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on: | ||
push: | ||
branches: [ master ] | ||
pull_request: | ||
branches: [ master ] | ||
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env: | ||
MODELS: "ambitious-sloth, placid-llama, chatty-frog, hiding-tiger, laid-back-lobster" | ||
JSON_FPATH: outputs.json | ||
MACRO_FPATH: macro.ijm | ||
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jobs: | ||
integration-tests: | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
include: | ||
- name: macos-arm64 | ||
os: macos-14 | ||
url_file_name: fiji-macosx.zip | ||
fiji_executable: Contents/MacOS/ImageJ-macosx | ||
- name: macos-x86_64 | ||
os: macos-13 | ||
url_file_name: fiji-macosx.zip | ||
fiji_executable: Contents/MacOS/ImageJ-macosx | ||
runs-on: ${{ matrix.os }} | ||
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steps: | ||
- name: Checkout code | ||
uses: actions/checkout@v4 | ||
- name: Install Python | ||
uses: actions/setup-python@v5 | ||
with: | ||
python-version: '3.13' | ||
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- name: Set up JDK 8 | ||
uses: actions/setup-java@v4 | ||
with: | ||
java-version: '8' | ||
distribution: 'zulu' | ||
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- name: Set up Fiji | ||
shell: bash | ||
run: | | ||
mkdir -p fiji | ||
curl -L -o fiji.zip https://downloads.imagej.net/fiji/latest/${{ matrix.url_file_name }} | ||
unzip fiji.zip -d fiji | ||
- name: Build Plugin | ||
run: mvn clean package | ||
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- name: Get plugin name and version | ||
shell: bash | ||
run: | | ||
MVN_VERSION=$(mvn -q \ | ||
-Dexec.executable=echo \ | ||
-Dexec.args='${project.version}' \ | ||
--non-recursive \ | ||
exec:exec) | ||
MVN_NAME=$(mvn -q \ | ||
-Dexec.executable=echo \ | ||
-Dexec.args='${project.name}' \ | ||
--non-recursive \ | ||
exec:exec) | ||
echo "version=${MVN_VERSION}" >> $GITHUB_OUTPUT | ||
echo "name=${MVN_NAME}" >> $GITHUB_OUTPUT | ||
id: mvn_info | ||
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- name: Copy Plugin to Fiji | ||
shell: bash | ||
run: cp target/${{steps.mvn_info.outputs.name}}-${{steps.mvn_info.outputs.version}}.jar fiji/Fiji.app/plugins/ | ||
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||
- name: Download dependencies | ||
shell: bash | ||
run: | | ||
curl -L --output-dir fiji/Fiji.app/jars/ -O "https://maven.scijava.org/content/groups/public/io/bioimage/dl-modelrunner/0.5.10-SNAPSHOT/dl-modelrunner-0.5.10-20241113.165548-69.jar" | ||
curl -L --output-dir fiji/Fiji.app/jars/ -O "https://repo1.maven.org/maven2/net/java/dev/jna/jna-platform/5.13.0/jna-platform-5.13.0.jar" | ||
- name: Set up engine using Jython script and Fiji headless | ||
shell: bash | ||
run: | | ||
fiji/Fiji.app/${{ matrix.fiji_executable }} --headless --console scripts/download_engines.py -engines_path fiji/Fiji.app/engines | ||
- name: Set up the wanted models to test and create macro | ||
shell: bash | ||
run: | | ||
fiji/Fiji.app/${{ matrix.fiji_executable }} --headless --console .github/create_macro.py \ | ||
-model_nicknames "${{ env.MODELS }}" \ | ||
-models_dir fiji/Fiji.app/models \ | ||
-macro_path ${{ env.MACRO_FPATH }} \ | ||
-json_fpath ${{ env.JSON_FPATH }} | ||
- name: Run macros | ||
shell: bash | ||
run: | | ||
fiji/Fiji.app/${{ matrix.fiji_executable }} --headless --console --debug -macro ${{ env.MACRO_FPATH }} | ||
- name: Check that the expected result has been produced | ||
shell: bash | ||
run: | | ||
fiji/Fiji.app/${{ matrix.fiji_executable }} --headless --console .github/check_outputs.py -json_fpath ${{ env.JSON_FPATH }} |
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