Dweinholz patch 1 #41
Workflow file for this run
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| # Forked from eKatchko/public-bioinformatics-databases | |
| name: Process changed files | |
| # Controls when the workflow will run | |
| on: | |
| pull_request: | |
| branches: | |
| - 'main' | |
| paths: | |
| - 'databases/**.json' | |
| workflow_dispatch: | |
| inputs: | |
| base: | |
| type: string | |
| default: main | |
| required: true | |
| head: | |
| type: string | |
| required: true | |
| jobs: | |
| # This workflow contains a single job called "changed-files" | |
| changed-files: | |
| # The type of runner that the job will run on | |
| runs-on: [self-hosted, fts3-client-production ] | |
| environment: APPROVAL_REQUIRED | |
| outputs: | |
| changed_files: ${{ steps.create-matrix.outputs.matrix }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| path: fts3-databases | |
| - name: Get changed files with git diff | |
| id: git-diff | |
| run: | | |
| git_diff_output=$(git diff --name-only origin/${{ github.base_ref || github.event.inputs.base }} origin/${{ github.head_ref || github.event.inputs.head }} | grep databases/) | |
| echo "files=$git_diff_output" >> "$GITHUB_OUTPUT" | |
| - name: Send changed files to fts3-connector | |
| if: steps.git-diff.outputs.files != '' | |
| run: | | |
| git_diff_output="${{ steps.git-diff.outputs.files}}" | |
| for file in $git_diff_output; do | |
| echo "Calling with $file" | |
| curl -H "X-AUTH-HEADER: ${{ secrets.FTS3_CLIENT_API_KEY }}" -H "Content-Type: application/json" -X POST -d @"$file" "${{ secrets.FTS3_CLIENT_ENDPOINT }}/transfer/dry" | |
| done | |
| - name: Skip if no changed files | |
| if: steps.git-diff.outputs.files == '' | |
| run: | | |
| echo "No changed files found in the 'databases/' directory. Skipping the step." | |