Dweinholz patch 1 #16
Workflow file for this run
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| # Forked from eKatchko/public-bioinformatics-databases | |
| name: Process changed files | |
| # Controls when the workflow will run | |
| on: | |
| pull_request: | |
| branches: | |
| - 'main' | |
| paths: | |
| - 'databases/**.json' | |
| workflow_dispatch: | |
| inputs: | |
| base: | |
| type: string | |
| default: main | |
| required: true | |
| head: | |
| type: string | |
| required: true | |
| jobs: | |
| # This workflow contains a single job called "changed-files" | |
| changed-files: | |
| # The type of runner that the job will run on | |
| runs-on: [self-hosted, fts3-client-production ] | |
| environment: APPROVAL_REQUIRED | |
| outputs: | |
| changed_files: ${{ steps.create-matrix.outputs.matrix }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Base SHA | |
| id: base-sha | |
| run: echo "sha=$(git rev-parse origin/${{ github.base_ref || github.event.inputs.base }})" >> $GITHUB_OUTPUT | |
| - name: Run changed-files with the commit of the last successful test workflow run | |
| id: changed-files-base-sha-push | |
| uses: tj-actions/changed-files@v39 | |
| with: | |
| base_sha: "${{ steps.base-sha.outputs.sha }}" | |
| files: | | |
| databases/*.json | |
| files_ignore: databases/database_schema.json | |
| - name: Create matrix from changed files | |
| id: create-matrix | |
| run: | | |
| if [[ -n "${{ steps.changed-files.outputs.all_files }}" ]]; then | |
| echo "matrix=$(echo "${{ steps.changed-files.outputs.all_files }}" | tr '\n' ',')" >> $GITHUB_OUTPUT | |
| else | |
| echo "matrix=" >> $GITHUB_OUTPUT | |
| fi | |
| shell: bash | |
| - name: Get changed files with git diff and send to fts3-connector | |
| id: git-diff | |
| run: | | |
| declare -a CHANGED=($(git diff --name-only -r origin/${{ github.base_ref || github.event.inputs.base }} origin/${{ github.head_ref || github.event.inputs.head }} | grep databases/**)) | |
| for file in "${CHANGED[@]}"; do | |
| echo "Calling with $file" | |
| curl -H "X-AUTH-HEADER: ${{ secrets.FTS3_CLIENT_API_KEY }}" -H "Content-Type: application/json" -X POST -d @$file "${{ vars.FTS3_CLIENT_ENDPOINT }}/transfer/dry" | |
| done | |
| validate_changed_jsons: | |
| needs: changed-files | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| FILENAME: ${{ needs.changed-files.outputs.changed_files}} | |
| uses: ./.github/workflows/validate_database_json.yml | |
| with: | |
| FILENAME: ${{ matrix.FILENAME }} | |
| secrets: inherit |