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Merge pull request bioconda#2234 from chapmanb/bcbio
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Update; bcbio-nextgen and bcbio-vm
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chapmanb authored Aug 29, 2016
2 parents 829761f + 2485819 commit 1be0030
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Showing 2 changed files with 11 additions and 7 deletions.
6 changes: 3 additions & 3 deletions recipes/bcbio-nextgen-vm/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -3,12 +3,12 @@ package:
version: '0.1.0a'

build:
number: 84
number: 85
skip: True # [not py27]

source:
fn: bcbio-nextgen-vm-c61d5f7.tar.gz
url: https://github.com/chapmanb/bcbio-nextgen-vm/archive/c61d5f7.tar.gz
fn: bcbio-nextgen-vm-92ab799.tar.gz
url: https://github.com/chapmanb/bcbio-nextgen-vm/archive/92ab799.tar.gz

requirements:
build:
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12 changes: 8 additions & 4 deletions recipes/bcbio-nextgen/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -3,16 +3,16 @@ package:
version: '1.0.0a0'

build:
number: 3
number: 4
skip: True # [not py27]

source:

#fn: bcbio-nextgen-0.9.9.tar.gz
#url: https://pypi.python.org/packages/4f/90/36f1908ef62b954102604cdfe9d4d7d490131050ae0cd294e27bac5989cc/bcbio-nextgen-0.9.9.tar.gz
#md5: b7ff9a89c247016282762f2f1ae9a036
fn: bcbio-nextgen-27b5ccb.tar.gz
url: https://github.com/chapmanb/bcbio-nextgen/archive/27b5ccb.tar.gz
fn: bcbio-nextgen-a28ddab.tar.gz
url: https://github.com/chapmanb/bcbio-nextgen/archive/a28ddab.tar.gz

requirements:
build:
Expand Down Expand Up @@ -73,10 +73,14 @@ requirements:

test:
imports:
- bcbio.distributed.ipython
- bcbio.distributed.multi
- bcbio.pipeline.main
- bcbio.provenance.do
# causes failure on OSX
# ImportError: dlopen(zmq/backend/cython/constants.so, 2): Library not loaded: @rpath/./libzmq.4.dylib
# Referenced from: /zmq/backend/cython/constants.so
# Reason: image not found
#- bcbio.distributed.ipython
commands:
- bcbio_nextgen.py -h
- bcbio_setup_genome.py -h
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