Fixed typo; updated GATK in Dockerfile.

ddrichel · Feb 11, 2022 · a830346 · a830346
1 parent ed225cf
commit a830346
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diff --git a/Dockerfile b/Dockerfile
@@ -59,10 +59,10 @@ WORKDIR /opt
 RUN ln -s $PURECN /opt/PureCN
 
 # install GATK4
-RUN wget --no-verbose https://github.com/broadinstitute/gatk/releases/download/4.2.2.0/gatk-4.2.2.0.zip && \
-    unzip gatk-4.2.2.0.zip -d /opt && \
-    rm gatk-4.2.2.0.zip
+RUN wget --no-verbose https://github.com/broadinstitute/gatk/releases/download/4.2.5.0/gatk-4.2.5.0.zip && \
+    unzip gatk-4.2.5.0.zip -d /opt && \
+    rm gatk-4.2.5.0.zip
 
-ENV PATH /opt/gatk-4.2.2.0:$PATH
+ENV PATH /opt/gatk-4.2.5.0:$PATH
 
 CMD ["/bin/bash"]
diff --git a/NEWS b/NEWS
@@ -13,7 +13,7 @@ SIGNIFICANT USER-VISIBLE CHANGES
       default BQ of 30). By default BQ is capped at 50 and variants below 25
       are ignored. Set min.supporting.reads to 0 to turn this off (#206).
     o More robust annotation of intervals with gene symbols
-    o Remove chrosomes not present in the centromeres GRanges object; useful
+    o Remove chromosomes not present in the centromeres GRanges object; useful
       to remove altcontigs somehow present (should not happen with intervals
       generated by IntervalFile.R)