Print error messages on stderr consistently #8
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In general, I wouldn't handle errors that way (printing and exiting), but rather raise a custom Python exception. |
wm75
commented
Jul 1, 2020
| @@ -575,23 +580,35 @@ def genome_mode(reference, reads, start, end, compress, para, tab): | |||
| try: | |||
| start = int(start)-1 | |||
| end = int(end) | |||
| except Exception: | |||
| print('User Error: invalid start/end coordinate(s)') | |||
| except ValueError: | |||
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Also note that the try/except won't catch negative values, if that's the intention.
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This pull request introduces 1 alert and fixes 2 when merging 77e91e7 into 52fd2a1 - view on LGTM.com new alerts:
fixed alerts:
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wm75
commented
Jul 1, 2020
| @@ -561,7 +563,10 @@ def check_tab(tab): | |||
| if int(tab) in [1, 2, 3, 4, 5, 6, 9, 10, 11, 12, 13, 14, 15, 16, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33]: | |||
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and do the int conversion outside of the function to avoid the duplicated action
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