Mouse spontaneous behavior reflects individual variation rather than estrous state

Authors

Dana Rubi Levy¹, Nigel Hunter¹, Sherry Lin¹, Emma Marie Robinson¹, Winthrop Gillis¹, Eli Benjamin Conlin¹, Rockwell Anyoha¹, Rebecca M. Shansky², Sandeep Robert Datta¹

¹Department of Neurobiology, Harvard Medical School, Boston, Massachusetts, USA

²Department of Psychology, Northeastern University, Boston, Massachusetts, USA

Overview

The repository holds scripts used for data analysis for the publication: Mouse spontaneous behavior reflects individual variation rather than estrous state found here: https://doi.org/10.1016/j.cub.2023.02.035

Scripts are run in Jupyter Notebook and are organized by the corresponding figure panels.

Notebooks for FigS2A and S2F require the installation of the MoSeq app (available for free academic use here: https://dattalab.github.io/moseq2-website/index.html).

Data

All Data necessary to run the notebooks is available to download from Zenodo.

Here: https://doi.org/10.5281/zenodo.7622958

Data is to be saved in the same folder as the notebooks, but paths can be changed if necessary in each script.

Troubleshooting

Please submit an issue if you experience problems running the codes, or have any additional questions.