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Updated access and files after the November 2021 update #2

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@adswa adswa commented Feb 24, 2022

After datalad-datasets/human-connectome-project-openaccess#31 this PR updates this subset of the HCP dataset with one additional file and an updated submodule change. Availability updates are already pushed.

…. Specifically, the dataset consists of all <sub>/MNINonLinearfsaverage_LR32k/<sub>.{R,L}.SmoothedMyelinMap.32k_fs_LR.func.gii files. The structure of the directory tree and file names are kept identical to the full HCP dataset

=== Do not change lines below ===
{
 "chain": [
  "03f4a1b86741f1b9d1ee164028f17104b5c16561"
 ],
 "cmd": "find .hcp/HCP1200 -mindepth 4 -maxdepth 5 -name '*.SmoothedMyelinMap.32k_fs_LR.func.gii' | sed -e 's#\\(\\.hcp/HCP1200\\)\\(.*\\)#\\1\\2\\x00.\\2#' | datalad copy-file -r --specs-from -",
 "dsid": "5736e834-478c-4e62-952f-06e66e68f698",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [
  "[0-9]*"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@adswa adswa requested a review from loj February 24, 2022 09:27
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I wasn't able to get the new file that was added.

❱ datalad get 549757/MNINonLinear/fsaverage_LR32k/549757.R.SmoothedMyelinMap.32k_fs_LR.func.gii
get(error): 549757/MNINonLinear/fsaverage_LR32k/549757.R.SmoothedMyelinMap.32k_fs_LR.func.gii (file) [not available; (Note that these git remotes have annex-ignore set: origin)]
❱ git annex whereis 549757/MNINonLinear/fsaverage_LR32k/549757.R.SmoothedMyelinMap.32k_fs_LR.func.gii
whereis 549757/MNINonLinear/fsaverage_LR32k/549757.R.SmoothedMyelinMap.32k_fs_LR.func.gii (0 copies) failed
git-annex: whereis: 1 failed

Do you also have this problem?

@adswa
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adswa commented Feb 24, 2022

Oh no... and thanks so much for finding this problem!
@mih, this may interest you. A git-annex whereis on this file in the source HCP dataset fails. I think I remember that happened during URL encoding problems.

adina@cpu0 in /tmp/.hcp on git:master
❱ git -C HCP1200/549757/MNINonLinear/ annex whereis fsaverage_LR32k/549757.R.SmoothedMyelinMap.32k_fs_LR.func.gii
whereis fsaverage_LR32k/549757.R.SmoothedMyelinMap.32k_fs_LR.func.gii (0 copies) failed
git-annex: whereis: 1 failed

There are a number of files that match this file name, but I poked a few of them, and they seem unaffected:

adina@cpu0 in /tmp/.hcp on git:master
❱ find . -name '*R.SmoothedMyelinMap.32k_fs_LR.func.gii'                                                      1 !
./HCP1200/124826/MNINonLinear/fsaverage_LR32k/124826.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/194140/MNINonLinear/fsaverage_LR32k/194140.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/849971/MNINonLinear/fsaverage_LR32k/849971.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/587664/MNINonLinear/fsaverage_LR32k/587664.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/153126/MNINonLinear/fsaverage_LR32k/153126.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/107220/MNINonLinear/fsaverage_LR32k/107220.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/168341/MNINonLinear/fsaverage_LR32k/168341.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/317332/MNINonLinear/fsaverage_LR32k/317332.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/990366/MNINonLinear/fsaverage_LR32k/990366.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/917558/MNINonLinear/fsaverage_LR32k/917558.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/121618/MNINonLinear/fsaverage_LR32k/121618.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/205826/MNINonLinear/fsaverage_LR32k/205826.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/592455/MNINonLinear/fsaverage_LR32k/592455.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/204319/MNINonLinear/fsaverage_LR32k/204319.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/134627/MNINonLinear/fsaverage_LR32k/134627.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/180129/MNINonLinear/fsaverage_LR32k/180129.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/223929/MNINonLinear/fsaverage_LR32k/223929.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/130518/MNINonLinear/fsaverage_LR32k/130518.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/116726/MNINonLinear/fsaverage_LR32k/116726.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/159239/MNINonLinear/fsaverage_LR32k/159239.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/299154/MNINonLinear/fsaverage_LR32k/299154.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/160123/MNINonLinear/fsaverage_LR32k/160123.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/176037/MNINonLinear/fsaverage_LR32k/176037.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/155938/MNINonLinear/fsaverage_LR32k/155938.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/825553/MNINonLinear/fsaverage_LR32k/825553.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/127832/MNINonLinear/fsaverage_LR32k/127832.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/102816/MNINonLinear/fsaverage_LR32k/102816.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/571144/MNINonLinear/fsaverage_LR32k/571144.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/559053/MNINonLinear/fsaverage_LR32k/559053.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/172635/MNINonLinear/fsaverage_LR32k/172635.R.SmoothedMyelinMap.32k_fs_LR.func.gii
./HCP1200/163432/MNINonLinear/fsaverage_LR32k/163432.R.SmoothedMyelinMap.32k_fs_LR.func.gii
[...]
git -C HCP1200/124826/MNINonLinear annex whereis fsaverage_LR32k/124826.R.SmoothedMyelinMap.32k_fs_LR.func.gii

whereis fsaverage_LR32k/124826.R.SmoothedMyelinMap.32k_fs_LR.func.gii (1 copy) 
        45ace812-96b5-4948-a397-6b8910473de0 -- [datalad]

  datalad: s3://hcp-openaccess/HCP_1200/124826/MNINonLinear/fsaverage_LR32k/124826.R.SmoothedMyelinMap.32k_fs_LR.func.gii
  datalad: s3://hcp-openaccess/HCP_1200/124826/MNINonLinear/fsaverage_LR32k/124826.R.SmoothedMyelinMap.32k_fs_LR.func.gii?versionId=4YXzzNO0DAduA2JfbQjstKCdi6l63oaC
ok

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