Code

Convert to nwb#44

Code

Merged

kabilar merged 88 commits intodatajoint:maindatajoint/element-array-ephys:mainfrom bendichter:convert_to_nwbbendichter/element-array-ephys:convert_to_nwbCopy head branch name to clipboardMay 9, 2022

+695-1

Commits

Commits on Nov 10, 2021

• Mult rootdirs. If sess_dir, check fullpath. Give OpenEphys fullpath.

  CBroz1

  committed
  720eb00

Commits on Dec 15, 2021

• add draft convert to nwb

  bendichter

  committed
  f3dd8d8

Commits on Jan 5, 2022

• * add lfp from source

  Show description for 8d75a61
  bendichter

  committed
  8d75a61

Commits on Jan 12, 2022

• Update element_array_ephys/export/nwb.py

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  bendichter

  and

  dimitri-yatsenko

  authored
  470b20a

• Update element_array_ephys/export/nwb.py

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  bendichter

  and

  dimitri-yatsenko

  authored
  3298341

• Update element_array_ephys/export/nwb.py

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  bendichter

  and

  dimitri-yatsenko

  authored
  e837452

Commits on Jan 14, 2022

• add documentation

  bendichter

  committed
  d2b93f2

• * optimize imports

  Show description for d924d57
  bendichter

  committed
  d924d57

• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

  Show description for b4d9c0e
  bendichter

  committed
  b4d9c0e

Commits on Jan 25, 2022

• add missing nwbfile arg

  bendichter

  committed
  a7f846b

• add some docstrings

  bendichter

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  b35ee72

• add readme for exporting to NWB

  bendichter

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  19f78b7

Commits on Jan 30, 2022

• refactor to include requirements for nwb conversion

  bendichter

  committed
  013ae7d

• relative import of ephys

  bendichter

  committed
  1363214

• add datetime import

  bendichter

  committed
  d1f3dab

• add optional session keys to ecephys_session_to_nwb

  bendichter

  committed
  365b43b

• fix nwbfile_kwargs logic

  bendichter

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  96c57f7

• fix nwbfile_kwargs logic

  bendichter

  committed
  eb47ee5

• import from workflow pipeline

  bendichter

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  1b67629

• import from workflow pipeline

  bendichter

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  5de22e0

• import session_to_nwb

  bendichter

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  1dccb68

• import probe

  bendichter

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  379ae11

• ephys.get_ephys_root_data_dir

  bendichter

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  e992478

• standardize slashes

  bendichter

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  8d3df71

• import os

  bendichter

  committed
  ba3f86a

• ephys.find_full_path

  bendichter

  committed
  654d567

Commits on Feb 4, 2022

• correctly set conversion and channel_conversion

  bendichter

  committed
  7deb00f

• refactor into gains_helper

  bendichter

  committed
  7953662

• add tests

  bendichter

  committed
  4cab8c8

Commits on Feb 8, 2022

• Merge branch 'main' into convert_to_nwb

  bendichter

  authored
  f8027cc

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  9374d94

Commits on Feb 9, 2022

• update import path

  bendichter

  committed
  6338daf

• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

  bendichter

  committed
  63b545d

Commits on Feb 10, 2022

• Rebase, squashed. See Details

  Show description for a557b17
  

  kabilar

  authored and

  CBroz1

  committed
  a557b17

Commits on Feb 11, 2022

• Avoid linking_module issues. See details.

  Show description for 2595dae
  CBroz1

  committed
  2595dae

Commits on Feb 15, 2022

• nwb function specification in linking_module

  

  Thinh Nguyen

  authored
  bf5e82a

• Merge pull request #1 from ttngu207/chris-nwb

  Show description for 6d7ad7c
  CBroz1

  authored
  6d7ad7c

Commits on Feb 16, 2022

• import the correct ephys module that has been activated

  

  Thinh Nguyen

  authored
  b4ffe1d

• Merge pull request CBroz1#2 from ttngu207/chris-nwb

  Show description for 2beb41b
  CBroz1

  authored
  2beb41b

• adjust imports in __init__ and nwb.py

  CBroz1

  committed
  782a4a5

Commits on Feb 22, 2022

• add tests for getting lfp data from datajoint

  bendichter

  committed
  fafdde1

Commits on Feb 28, 2022

• import GenericDataChunkIterator from hdmf

  bendichter

  committed
  a7f4624

• rmv subject_id

  bendichter

  committed
  806684f

• Merge remote-tracking branch 'cbroz1/ben' into convert_to_nwb

  Show description for 5b942b3
  bendichter

  committed
  5b942b3

Commits on Mar 1, 2022

• rmv tests (they are moved to the ephys workflow)

  bendichter

  committed
  c63c8c4

Commits on Mar 4, 2022

• fix imports

  bendichter

  committed
  cc14671

Commits on Mar 21, 2022

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  b373b26

• Update element_array_ephys/ephys_acute.py

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  bendichter

  and

  CBroz1

  authored
  e973743

• Update element_array_ephys/export/nwb/nwb.py

  Show description for 3ae6e2d
  

  bendichter

  and

  CBroz1

  authored
  3ae6e2d

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  c68f2ca

• Update element_array_ephys/export/nwb/README.md

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  bendichter

  and

  kabilar

  authored
  584c738

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

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  a1fb193

• Update element_array_ephys/export/nwb/README.md

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  bendichter

  and

  kabilar

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  24ac2c0

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  abccafa

• Update element_array_ephys/export/nwb/README.md

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  bendichter

  and

  kabilar

  authored
  00c3691

• add docstring for gain_helper

  bendichter

  committed
  12974ff

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  ba6cbcf

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  49fac08

• specify releases for dependencies

  bendichter

  committed
  daccfc4

• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

  bendichter

  committed
  826335b

• Merge branch 'main' into convert_to_nwb

  kabilar

  authored
  b3779e5

• Update element_array_ephys/export/nwb/nwb.py

  Show description for 9e72773
  

  bendichter

  and

  CBroz1

  authored
  9e72773

• Update element_array_ephys/export/nwb/nwb.py

  Show description for 2ee2bd5
  

  bendichter

  and

  kabilar

  authored
  2ee2bd5

• Update element_array_ephys/export/nwb/nwb.py

  bendichter

  authored
  c200699

• fix docstring for get_electrodes_mapping

  bendichter

  committed
  acdb5f9

• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

  bendichter

  committed
  a7b2abb

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  cbefcde

Commits on Mar 22, 2022

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  a01ee9c

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  2e621c0

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  15044cf

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  2526812

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  766f4eb

• Update element_array_ephys/export/nwb/nwb.py

  Show description for 842beec
  

  bendichter

  and

  kabilar

  authored
  842beec

• add explanation in docstring of add_ephys_units_to_nwb

  bendichter

  committed
  3971fe6

• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

  bendichter

  committed
  bc54009

• add explanation for index parameter

  bendichter

  committed
  707adff

• fix insertion record

  bendichter

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  82c8655

• rmv units_query

  bendichter

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  0152c5d

• trying clustering_query..proj()

  bendichter

  committed
  c2004ea

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  068ea3d

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  59028cb

Commits on Apr 18, 2022

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  d94453b

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  fb98327

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  kabilar

  authored
  9f9872c

Commits on Apr 27, 2022

• remove ephys_no_curation.py

  bendichter

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  3e07c61

• Merge remote-tracking branch 'origin/convert_to_nwb' into convert_to_nwb

  bendichter

  committed
  6fc51b0

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  dimitri-yatsenko

  authored
  441cfe2

• Update element_array_ephys/export/nwb/nwb.py

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  bendichter

  and

  dimitri-yatsenko

  authored
  9ee6088