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Add DevContainers + Codespaces tutorial #173

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merged 29 commits into from
Nov 9, 2023

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kushalbakshi
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@kushalbakshi kushalbakshi commented Oct 25, 2023

This PR adds DevContainers configured to run Codespaces for tutorials and workshops. The proposed changes will include the following:

  • DevContainer configuration that builds a Codespace on the GitHub repository with S3 mounted sample data
  • Tutorial pipeline
  • 60 min tutorial notebook
  • Short demo notebook
  • Updated setup.py
  • Updated version.py and CHANGELOG

The scope for this PR has been altered slightly. Documentation updates will be included in a separate PR since the scope of updates is very large.

@kushalbakshi kushalbakshi marked this pull request as ready for review October 27, 2023 16:07
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I think all of these new changes should belong in tutorial_pipeline.py
Same is true for the calcium-imaging and deeplabcut elements - let's discuss further

@@ -22,19 +21,66 @@ to assemble a fully functional pipeline.

![datajoint](https://raw.githubusercontent.com/datajoint/element-array-ephys/main/images/attached_array_ephys_element_acute.svg)

+ We have designed variations of the pipeline to handle different use cases. Displayed
above is the `ephys_acute` schema for acute electrophysiology recordings. Details on
all `ephys` schemas can be found in the documentation.
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The documentation can be hyperlinked here to https://datajoint.com/docs/elements/element-array-ephys/0.2/


+ [Documentation](https://datajoint.com/docs/elements/element-array-ephys)

## Support

+ If you need help getting started or run into any errors, please contact our team by email at [email protected].
+ If you need help getting started or run into any errors, please contact our team by
email at [email protected].
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Are we not including the "open a GitHub Issue" option here?

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Given that this is a jupyter notebook, it will be more convenient to create a minor PR to be merged into this PR for the review for this tutorial.

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I am working on it.

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Thank you, @MilagrosMarin. That sounds good.

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I will merge this PR and updates on the proposed tutorial will be included in an upcoming PR since the scope of updates is very large.

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Thank you @kushalbakshi for this PR!

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I've checked the creation of a codespace and have run the entire tutorial notebook with successful results.

@MilagrosMarin MilagrosMarin merged commit 140384e into datajoint:main Nov 9, 2023
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3 participants