Diseases at jensen lab #938
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update `associationSource` to `associationType` and the names for the associated enum appropriately; update output csv file names; update checks for icd10 code dcids and update references to these links
change csv and tmcf file names to `experiment.*` and update `associationSource` to `associationType`
Update property names
fix links to associationType values
Update property names and name of referencing csv + tmcf file pair
….tmcf Update property names and the naming of the csv + tmcf pair files
fix links to NonCodingRNATypeEnum
…ng.tmcf Update property names and the names for the tmcf and csv file pair
…xtMining.tmcf Update property names and the file names for the csv + tmcf pair
update tmcf filepaths
add link to run.sh file
update output csv file names
Add commands to combine codingGenes-textMining csv files into a single csv
fix malformed tmcf line
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fix link bug
update the script so that it downloads, cleans and formats the data in CSV, and removes the original files
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… is updated weekly. This includes the data through February 2024. This update fixes the broken links between DiseaseGeneAssociation nodes and the corresponding Disease and Gene nodes. This update corresponds to PR #938 (datacommonsorg/data#938). PiperOrigin-RevId: 612641748
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Mar 5, 2024
… is updated weekly. This includes the data through March 4, 2024. This update fixes the broken links between DiseaseGeneAssociation nodes and the corresponding Disease and Gene nodes. This update corresponds to PR #938 (datacommonsorg/data#938). PiperOrigin-RevId: 612641748
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Mar 6, 2024
… is updated weekly. This includes the data through March 4, 2024. This update fixes the broken links between DiseaseGeneAssociation nodes and the corresponding Disease and Gene nodes. This update corresponds to PR #938 (datacommonsorg/data#938). PiperOrigin-RevId: 612641748
copybara-service bot
pushed a commit
to datacommonsorg/schema
that referenced
this pull request
Mar 6, 2024
… is updated weekly. This includes the data through March 4, 2024. This update fixes the broken links between DiseaseGeneAssociation nodes and the corresponding Disease and Gene nodes. This update corresponds to PR #938 (datacommonsorg/data#938). PiperOrigin-RevId: 613361835
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This is now being handled by #998 |
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This updates the script and tmcf files to fix bugs in suhana's Disease by Jensen Lab import, which is added in "Diseases at Jensen Lab Import" PR 891 (https://github.com/datacommonsorg/data/pull/891/files). This makes the PR for the code behind this import ready for submission