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CARDS-2026: Automatically delete names and emails once they are no lo…
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.../src/main/java/io/uhndata/cards/patients/internal/PatientInformationCleanupScheduler.java
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/* | ||
* Licensed to the Apache Software Foundation (ASF) under one | ||
* or more contributor license agreements. See the NOTICE file | ||
* distributed with this work for additional information | ||
* regarding copyright ownership. The ASF licenses this file | ||
* to you under the Apache License, Version 2.0 (the | ||
* "License"); you may not use this file except in compliance | ||
* with the License. You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, | ||
* software distributed under the License is distributed on an | ||
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY | ||
* KIND, either express or implied. See the License for the | ||
* specific language governing permissions and limitations | ||
* under the License. | ||
*/ | ||
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package io.uhndata.cards.patients.internal; | ||
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import org.apache.sling.api.resource.ResourceResolverFactory; | ||
import org.apache.sling.commons.scheduler.ScheduleOptions; | ||
import org.apache.sling.commons.scheduler.Scheduler; | ||
import org.osgi.service.component.ComponentContext; | ||
import org.osgi.service.component.annotations.Activate; | ||
import org.osgi.service.component.annotations.Component; | ||
import org.osgi.service.component.annotations.Reference; | ||
import org.slf4j.Logger; | ||
import org.slf4j.LoggerFactory; | ||
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import io.uhndata.cards.forms.api.FormUtils; | ||
import io.uhndata.cards.resolverProvider.ThreadResourceResolverProvider; | ||
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/** | ||
* Schedule the cleanup of Patient information data every midnight. | ||
* | ||
* @version $Id$ | ||
* @since 0.9.2 | ||
*/ | ||
@Component(immediate = true) | ||
public class PatientInformationCleanupScheduler | ||
{ | ||
/** Default log. */ | ||
private static final Logger LOGGER = LoggerFactory.getLogger(PatientInformationCleanupScheduler.class); | ||
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private static final String SCHEDULER_JOB_NAME = "PatientInformationCleanup"; | ||
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/** Provides access to resources. */ | ||
@Reference | ||
private ResourceResolverFactory resolverFactory; | ||
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/** For sharing the resource resolver with other services. */ | ||
@Reference | ||
private ThreadResourceResolverProvider rrp; | ||
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/** The utils for working with form data. */ | ||
@Reference | ||
private FormUtils formUtils; | ||
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/** The scheduler for rescheduling jobs. */ | ||
@Reference | ||
private Scheduler scheduler; | ||
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@Activate | ||
protected void activate(final ComponentContext componentContext) throws Exception | ||
{ | ||
try { | ||
// Every night at midnight | ||
final ScheduleOptions options = this.scheduler.EXPR("0 0 0 * * ? *"); | ||
options.name(SCHEDULER_JOB_NAME); | ||
options.canRunConcurrently(false); | ||
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final Runnable cleanupJob = new PatientInformationCleanupTask(this.resolverFactory, this.rrp, | ||
this.formUtils); | ||
this.scheduler.schedule(cleanupJob, options); | ||
} catch (final Exception e) { | ||
LOGGER.error("PatientInformationCleanup failed to schedule: {}", e.getMessage(), e); | ||
} | ||
} | ||
} |
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...ortal/src/main/java/io/uhndata/cards/patients/internal/PatientInformationCleanupTask.java
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/* | ||
* Licensed to the Apache Software Foundation (ASF) under one | ||
* or more contributor license agreements. See the NOTICE file | ||
* distributed with this work for additional information | ||
* regarding copyright ownership. The ASF licenses this file | ||
* to you under the Apache License, Version 2.0 (the | ||
* "License"); you may not use this file except in compliance | ||
* with the License. You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, | ||
* software distributed under the License is distributed on an | ||
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY | ||
* KIND, either express or implied. See the License for the | ||
* specific language governing permissions and limitations | ||
* under the License. | ||
*/ | ||
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package io.uhndata.cards.patients.internal; | ||
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import java.time.ZonedDateTime; | ||
import java.util.Iterator; | ||
import java.util.Map; | ||
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import javax.jcr.Node; | ||
import javax.jcr.NodeIterator; | ||
import javax.jcr.PathNotFoundException; | ||
import javax.jcr.RepositoryException; | ||
import javax.jcr.ValueFormatException; | ||
import javax.jcr.query.Query; | ||
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import org.apache.sling.api.resource.LoginException; | ||
import org.apache.sling.api.resource.PersistenceException; | ||
import org.apache.sling.api.resource.Resource; | ||
import org.apache.sling.api.resource.ResourceResolver; | ||
import org.apache.sling.api.resource.ResourceResolverFactory; | ||
import org.slf4j.Logger; | ||
import org.slf4j.LoggerFactory; | ||
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import io.uhndata.cards.auth.token.impl.CardsTokenImpl; | ||
import io.uhndata.cards.forms.api.FormUtils; | ||
import io.uhndata.cards.resolverProvider.ThreadResourceResolverProvider; | ||
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/** | ||
* Periodically clears last_name, first_name, email from any Patient information form of patient subjects | ||
* for whom the last Visit information form has surveys_submitted set to true or the token associated with the visit | ||
* has expired. | ||
* | ||
* @version $Id$ | ||
* @since 0.9.2 | ||
*/ | ||
public class PatientInformationCleanupTask implements Runnable | ||
{ | ||
/** Default log. */ | ||
private static final Logger LOGGER = LoggerFactory.getLogger(PatientInformationCleanupTask.class); | ||
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/** Provides access to resources. */ | ||
private final ResourceResolverFactory resolverFactory; | ||
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/** For sharing the resource resolver with other services. */ | ||
private final ThreadResourceResolverProvider rrp; | ||
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private final FormUtils formUtils; | ||
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/** | ||
* @param resolverFactory a valid ResourceResolverFactory providing access to resources | ||
* @param rrp ThreadResourceResolverProvider sharing the resource resolver with other services | ||
* @param formUtils for working with form data | ||
*/ | ||
PatientInformationCleanupTask(final ResourceResolverFactory resolverFactory, | ||
final ThreadResourceResolverProvider rrp, final FormUtils formUtils) | ||
{ | ||
this.resolverFactory = resolverFactory; | ||
this.rrp = rrp; | ||
this.formUtils = formUtils; | ||
} | ||
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@Override | ||
@SuppressWarnings("checkstyle:CyclomaticComplexity") | ||
public void run() | ||
{ | ||
boolean mustPopResolver = false; | ||
try (ResourceResolver resolver = this.resolverFactory | ||
.getServiceResourceResolver(Map.of(ResourceResolverFactory.SUBSERVICE, "VisitFormsPreparation"))) { | ||
this.rrp.push(resolver); | ||
mustPopResolver = true; | ||
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// Gather the needed UUIDs to place in the query | ||
final String patientInformationQuestionnaire = | ||
(String) resolver.getResource("/Questionnaires/Patient information").getValueMap().get("jcr:uuid"); | ||
final String visitInformationQuestionnaire = | ||
(String) resolver.getResource("/Questionnaires/Visit information").getValueMap().get("jcr:uuid"); | ||
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// Query: | ||
final Iterator<Resource> resources = resolver.findResources(String.format( | ||
// select the data forms | ||
"select distinct dataForm.*" | ||
+ " from [cards:Form] as dataForm" | ||
// belonging to a visit | ||
+ " inner join [cards:Form] as visitInformation on visitInformation.subject = dataForm.subject" | ||
+ " where" | ||
// link to the correct Visit Information questionnaire | ||
+ " visitInformation.questionnaire = '%1$s'" | ||
// link to the correct Patient Information questionnaire | ||
+ " and dataForm.questionnaire = '%2$s'", | ||
visitInformationQuestionnaire, patientInformationQuestionnaire), | ||
Query.JCR_SQL2); | ||
resources.forEachRemaining(form -> { | ||
try { | ||
Node formNode = form.adaptTo(Node.class); | ||
if (!canDeleteInformation(formNode, resolver, visitInformationQuestionnaire, | ||
patientInformationQuestionnaire)) { | ||
return; | ||
} | ||
final NodeIterator children = formNode.getNodes(); | ||
while (children.hasNext()) { | ||
final Node child = children.nextNode(); | ||
if (child.isNodeType("cards:Answer")) { | ||
final String name = child.getProperty("question").getNode().getName(); | ||
if ("first_name".equals(name) || "last_name".equals(name) || "email".equals(name)) { | ||
child.remove(); | ||
} | ||
} | ||
} | ||
} catch (final RepositoryException e) { | ||
LOGGER.warn("Failed to delete patient information {}: {}", form.getPath(), e.getMessage()); | ||
} | ||
}); | ||
resolver.commit(); | ||
} catch (final LoginException e) { | ||
LOGGER.warn("Invalid setup, service rights not set up for the patient information cleanup task"); | ||
} catch (final PersistenceException e) { | ||
LOGGER.warn("Failed to delete patient information: {}", e.getMessage()); | ||
} finally { | ||
if (mustPopResolver) { | ||
this.rrp.pop(); | ||
} | ||
} | ||
} | ||
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private boolean canDeleteInformation(final Node form, final ResourceResolver resolver, final String visitQ, | ||
final String patientQ) throws ValueFormatException, PathNotFoundException, RepositoryException | ||
{ | ||
// run query to get all associated Visit information forms sorted by time property | ||
Iterator<Resource> resources = resolver.findResources(String.format( | ||
// select the data forms | ||
"select distinct visitInformation.*" | ||
+ " from [cards:Form] as visitInformation" | ||
// belonging to a visit | ||
+ " inner join [cards:Form] as dataForm on visitInformation.subject = dataForm.subject" | ||
+ " where" | ||
// link to the correct Visit Information questionnaire | ||
+ " visitInformation.questionnaire = '%1$s'" | ||
// link to the correct Patient Information questionnaire | ||
+ " and dataForm.questionnaire = '%2$s'" | ||
+ " and dataForm.[jcr:uuid] = '%3$s'" | ||
+ " order by visitInformation.time desc", | ||
visitQ, patientQ, form.getProperty("jcr:uuid").getString()), | ||
Query.JCR_SQL2); | ||
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if (!resources.hasNext()) { | ||
return false; | ||
} | ||
// get the last visit and see if it's surveys_submitted = true | ||
final Node visit = resources.next().adaptTo(Node.class); | ||
if (visit == null) { | ||
return false; | ||
} | ||
if (visit.hasProperty("surveys_submitted") && visit.getProperty("surveys_submitted").getBoolean()) { | ||
return true; | ||
} | ||
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final Node visitSubjectPath = this.formUtils.getSubject(visit); | ||
// run the query to get an expired token associated with patient name and visit | ||
resources = resolver.findResources(String.format( | ||
"select * from [cards:Token]" | ||
+ " where" | ||
+ " [" + CardsTokenImpl.TOKEN_ATTRIBUTE_EXPIRY + "] < '%1$s'" | ||
+ " and [cards:sessionSubject] = '%2$s'", | ||
ZonedDateTime.now(), visitSubjectPath.getPath()), | ||
Query.JCR_SQL2); | ||
if (resources.hasNext()) { | ||
return true; | ||
} | ||
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return false; | ||
} | ||
} |