pl-covidnet

Table of Contents

• Abstract
• Synopsis
• Description
• Agruments
• Models
• Local Build
• Run

Abstract

Plugin to ChRIS for covidnet functionalities

Synopsis

python covidnet.py
    [-v <level>] [--verbosity <level>]
    [--version]
    [--man]
    [--meta]
    <inputDir>
    <outputDir>
    [--imagefile] <imagefile>

Description

covidnet.py is a ChRIS-based application that integrates COVID-Net to ChRIS

Agruments

[-v <level>] [--verbosity <level>]
Verbosity level for app. Not used currently.

[--version]
If specified, print version number.

[--man]
If specified, print (this) man page.

[--meta]
If specified, print plugin meta data.

[--meta]
If specified, print plugin meta data.

[--imagefile]
The name of the input image in the input directory, this is required

Models

The COVIDNet-CXR4-B, COVIDNet-SEV-GEO, and COVIDNet-SEV-OPC models are downloaded from https://github.com/lindawangg/COVID-Net/blob/master/docs/models.md

Local Build

DOCKER_BUILDKIT=1 docker build -t local/pl-covidnet .

Run

docker run --rm -v $PWD/in:/incoming -v $PWD/out:/outgoing    \
    darwinai/covidnet-pl covidnet                             \
            --imagefile ex-covid.jpeg /incoming /outgoing