CI, BENCH: pin seaborn to avoid namespace issues with asv #858
Workflow file for this run
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name: Python Testing | |
on: | |
push: | |
branches: | |
- main | |
paths: | |
- darshan-util/** | |
- include/** | |
pull_request: | |
branches: | |
- main | |
paths: | |
- darshan-util/** | |
- include/** | |
- .github/workflows/** | |
jobs: | |
test_pydarshan: | |
strategy: | |
matrix: | |
platform: [ubuntu-latest, | |
macos-latest] | |
python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"] | |
runs-on: ${{ matrix.platform }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install --upgrade pyflakes asv pytest-cov "mypy<1.0.0" | |
- if: ${{matrix.platform == 'macos-latest'}} | |
name: Install MacOS deps | |
run: | | |
brew install automake | |
- name: Install darshan-util | |
run: | | |
mkdir darshan_install | |
export DARSHAN_INSTALL_PATH=$PWD/darshan_install | |
git submodule update --init | |
./prepare.sh | |
cd darshan-util | |
mkdir build | |
cd build | |
../configure --prefix=$DARSHAN_INSTALL_PATH --enable-apxc-mod --enable-apmpi-mod | |
make | |
make install | |
make check | |
- name: Install pydarshan | |
run: | | |
cd darshan-util/pydarshan | |
python -m pip install .[test] | |
# only install the darshan_logs project in some CI | |
# entries so we test proper handling of skips | |
# in test suite | |
- if: ${{matrix.python-version != 3.8}} | |
name: Install darshan_logs package | |
run: | | |
python -m pip install git+https://github.com/darshan-hpc/darshan-logs.git@main | |
- if: ${{matrix.python-version == 3.8}} | |
name: Use minimal deps | |
run: | | |
# uninstall deps that are not absolute requirements | |
# to make sure that i.e., tests skip appropriately | |
python -m pip uninstall -y lxml | |
- name: Test with pytest | |
run: | | |
export LD_LIBRARY_PATH=$PWD/darshan_install/lib | |
export DYLD_FALLBACK_LIBRARY_PATH=$PWD/darshan_install/lib | |
# the test suite should be portable | |
# to any directory--it must be possible | |
# to check HPC spack installs for example | |
cd $RUNNER_TEMP | |
site_packages=$(pip show darshan | grep Location | cut -d ' ' -f 2) | |
pytest -W error::FutureWarning -W error:"The join function was deprecated in Matplotlib" --pyargs darshan --cov-report xml --cov=$site_packages/darshan | |
- name: mypy check | |
run: | | |
export LD_LIBRARY_PATH=$PWD/darshan_install/lib | |
export DYLD_FALLBACK_LIBRARY_PATH=$PWD/darshan_install/lib | |
cd darshan-util/pydarshan | |
mypy darshan | |
- name: pyflakes check | |
run: | | |
cd darshan-util/pydarshan | |
pyflakes darshan/backend | (grep -E -i 'assigned to but never used' || exit 0 && exit 123) | |
- name: asv check | |
run: | | |
export LD_LIBRARY_PATH=$PWD/darshan_install/lib | |
export DYLD_FALLBACK_LIBRARY_PATH=$PWD/darshan_install/lib | |
cd darshan-util/pydarshan/benchmarks | |
python -m pip install "seaborn==0.12" | |
python -m asv check -E existing | |
- name: codecov check | |
uses: codecov/codecov-action@v3 | |
with: | |
files: $RUNNER_TEMP/coverage.xml,/home/runner/work/_temp/coverage.xml,/Users/runner/work/_temp/coverage.xml | |
fail_ci_if_error: False |