LDMS implementation for runtime I/O collection #811
Workflow file for this run
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| name: Python Testing | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - darshan-util/** | |
| - include/** | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - darshan-util/** | |
| - include/** | |
| - .github/workflows/** | |
| jobs: | |
| test_pydarshan: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, | |
| macos-latest] | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade pytest pyflakes asv pytest-cov lxml matplotlib packaging humanize "mypy<1.0.0" | |
| - if: ${{matrix.platform == 'macos-latest'}} | |
| name: Install MacOS deps | |
| run: | | |
| brew install automake | |
| - name: Install darshan-util | |
| run: | | |
| mkdir darshan_install | |
| export DARSHAN_INSTALL_PATH=$PWD/darshan_install | |
| git submodule update --init | |
| ./prepare.sh | |
| cd darshan-util | |
| mkdir build | |
| cd build | |
| ../configure --prefix=$DARSHAN_INSTALL_PATH --enable-apxc-mod --enable-apmpi-mod | |
| make | |
| make install | |
| make check | |
| - name: Install pydarshan | |
| run: | | |
| cd darshan-util/pydarshan | |
| python -m pip install . | |
| # shim for importlib.resources on Python < 3.9 | |
| - if: ${{matrix.python-version < 3.9}} | |
| name: Install importlib_resources | |
| run: | | |
| python -m pip install -U importlib_resources | |
| # only install the darshan_logs project in some CI | |
| # entries so we test proper handling of skips | |
| # in test suite | |
| - if: ${{matrix.python-version != 3.8}} | |
| name: Install darshan_logs package | |
| run: | | |
| python -m pip install git+https://github.com/darshan-hpc/darshan-logs.git@main | |
| - if: ${{matrix.python-version == 3.8}} | |
| name: Use minimal deps | |
| run: | | |
| # uninstall deps that are not absolute requirements | |
| # to make sure that i.e., tests skip appropriately | |
| python -m pip uninstall -y lxml | |
| - name: Test with pytest | |
| run: | | |
| export LD_LIBRARY_PATH=$PWD/darshan_install/lib | |
| export DYLD_FALLBACK_LIBRARY_PATH=$PWD/darshan_install/lib | |
| # the test suite should be portable | |
| # to any directory--it must be possible | |
| # to check HPC spack installs for example | |
| cd $RUNNER_TEMP | |
| site_packages=$(pip show darshan | grep Location | cut -d ' ' -f 2) | |
| pytest -W error::FutureWarning -W error:"The join function was deprecated in Matplotlib" --pyargs darshan --cov-report xml --cov=$site_packages/darshan | |
| - name: mypy check | |
| run: | | |
| export LD_LIBRARY_PATH=$PWD/darshan_install/lib | |
| export DYLD_FALLBACK_LIBRARY_PATH=$PWD/darshan_install/lib | |
| cd darshan-util/pydarshan | |
| mypy darshan | |
| - name: pyflakes check | |
| run: | | |
| cd darshan-util/pydarshan | |
| pyflakes darshan/backend | (grep -E -i 'assigned to but never used' || exit 0 && exit 123) | |
| - name: asv check | |
| run: | | |
| export LD_LIBRARY_PATH=$PWD/darshan_install/lib | |
| export DYLD_FALLBACK_LIBRARY_PATH=$PWD/darshan_install/lib | |
| cd darshan-util/pydarshan/benchmarks | |
| python -m asv check -E existing | |
| - name: codecov check | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: $RUNNER_TEMP/coverage.xml,/home/runner/work/_temp/coverage.xml,/Users/runner/work/_temp/coverage.xml | |
| fail_ci_if_error: False |