Merge pull request #11 from danforthcenter/disp_filter_fig

changes from disparity filter work

R/asvDist.R

@@ -131,7 +131,7 @@ asvDist <- function(asvTab, asvCols = NULL, method = "spearman",
     p <- ggplot2::ggplot(ldf, ggplot2::aes(
       x = .data[["c1"]],
       y = .data[["c2"]],
-      fill = ldf[[method]]
+      fill = .data[[method]]
     )) +
       ggplot2::geom_tile(color = NA, linewidth = 0) +
       viridis::scale_fill_viridis(na.value = "grey100") +

R/netThresh.R

@@ -24,12 +24,7 @@
 #'
 #' @import parallel
 #' @import chngpt
-#' @return A named list (same as net) with three elements:
-#' \itemize{
-#'    \item{"Nodes" is a dataframe of nodes and their metadata}
-#'    \item{"Edges" is a dataframe of edges connecting nodes.}
-#'    \item{"graph" is the igraph object used to generate the dataframes.}
-#' }
+#' @return A data frame of model results, same as \code{thresh}.
 #' @examples
 #'
 #' taxa <- c(