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PlantCV v3.7.0

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@HaleySchuhl HaleySchuhl released this 04 Dec 02:05
7cd6ccb

DOI

  • Dropped Python v2.7 support (https://python3statement.org/).
  • Added a Hyperspectral tool sub-package:
    • Read in ENVI hyperspectral data with new option for the existing plantcv.readimage function. While reading in hyperspectral data a pseudo-rgb image is also created.
    • Calibrate raw hyperspectral image data with white and dark reference images with plantcv.hyperspectral.calibrate.
    • Calculate indices (e.g. NDVI) from a hyperspectral datacube with plantcv.hyperspectral.extract_index.
    • Extract bands from a hyperspectral datacube that are the closest to user defined wavelengths with plantcv.hyperspectral.extract_wavelength.
    • Add functionality to the existing function plantcv.apply_mask that allows users to mask hyperspectral images.
    • Add documentation pages and edit existing documentation pages to reflect all additions.
    • Add a hyperspectral workflow tutorial.
  • Add documentation
    • Underlying functions used in plantcv-workflow.
    • Information about updating PlantCV.
  • Minor update to plantcv.morphology.segment_sort to ensure the function is robust.
  • Enhance various region of interest plantcv.roi.* functions to draw the debug image before hitting the fatal error when an ROI extends beyond the image boundaries and start printing a warning if a user defined grid causes ROI's to overlap