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PlantCV v3.1.0
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@nfahlgren nfahlgren released this 07 Feb 18:52
v3.1.0
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PlantCV v3.1.0 addresses several bugs and usability issues. Big thanks to @HaleySchuhl and @dschneiderch!

  • All analysis functions now output visualization images rather than attempting to save them directly. This removes the filename input parameter and gives users the flexibility to save, plot, etc. what they want to where they want.
  • A new function pseudocolor was added to give users the ability and flexibility to take grayscale images and colorize them with any matplotlib colormap, autocrop them to the plant (or other object), mask out background, etc. This function can be used with the changes made above to customize visualization of output images. Colorized images have a built-in color scale bar.
  • Due to the changes above, the plot_colorbar function was removed as it's no longer used.
  • Histograms are now plotted with plotnine instead of matplotlib.
  • A Canny edge detection function was added (canny_edge_detect).
  • A color standard card auto-detection method (transform.find_color_card) was added.
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