Code

Reading TIF file#3

Code

Merged

nfahlgren merged 75 commits intodanforthcenter:maindanforthcenter/plantcv-geospatial:mainfrom dhiraj-ms:tifreadingdhiraj-ms/plantcv-geospatial:tifreadingCopy head branch name to clipboardMay 18, 2024

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Commits

Commits on Feb 27, 2024

• Reading TIF file

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• Updated code to read TIF file

  dhiraj-ms

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• Final Updated Code to Read TIF File

  dhiraj-ms

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• Final Version of TIF Reading Function

  dhiraj-ms

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Commits on Mar 4, 2024

• Merge branch 'main' into tifreading

  HaleySchuhl

  authored
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• Merge branch 'main' into tifreading

  nfahlgren

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Commits on Mar 7, 2024

• move python file into geospatial subpackage

  HaleySchuhl

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• add readimage function to init

  HaleySchuhl

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• start implementing Spectral_data object

  HaleySchuhl

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• fill in unknowns of Spectral_data

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Commits on Mar 11, 2024

• update function name to read_geotif

  HaleySchuhl

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• Update read_geotif.py

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  HaleySchuhl

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Commits on Mar 14, 2024

• implement wavelength dictionaries and pseudo_rgb

  HaleySchuhl

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• missing import of numpy

  HaleySchuhl

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Commits on Mar 21, 2024

• update the way bands are parsed

  HaleySchuhl

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• Update read_geotif.py

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• remove print statement

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• reshape datacube and add temporary plotting statement

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• for consistency rename filepath to filename

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Commits on Mar 26, 2024

• band band fatal error

  HaleySchuhl

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• Create 615.tif

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• Update conftest.py

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• Create test_geospatial_read_geotif.py

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Commits on Mar 27, 2024

• fix iteration for bad band input check

  HaleySchuhl

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• Update test_geospatial_read_geotif.py

  HaleySchuhl

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• add bad input test

  HaleySchuhl

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Commits on Mar 28, 2024

• deepsource fixes

  HaleySchuhl

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• minor syntax for more deepsource things

  HaleySchuhl

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Commits on Apr 11, 2024

• update pseudoRGB creation method

  HaleySchuhl

  committed
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• Merge branch 'main' into tifreading

  nfahlgren

  authored
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• cast float32

  HaleySchuhl

  committed
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• Merge branch 'tifreading' of https://github.com/dhiraj-ms/plantcv-geospatial into pr/3

  HaleySchuhl

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• integrate functionality for list of numbers

  HaleySchuhl

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Commits on Apr 12, 2024

• troubleshooting, will remove extra code soon

  HaleySchuhl

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Commits on Apr 15, 2024

• remove pseudo rgb code

  HaleySchuhl

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• Update read_geotif.md

  HaleySchuhl

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• remove redundant code

  HaleySchuhl

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Commits on Apr 17, 2024

• add in _debug and background masking

  HaleySchuhl

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Commits on Apr 18, 2024

• trailing whitespace

  HaleySchuhl

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• update masking method

  HaleySchuhl

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• Merge branch 'main' into tifreading

  HaleySchuhl

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Commits on Apr 22, 2024

• add _find_closest_unsorted function

  HaleySchuhl

  committed
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• update param name in function call _find_closest_unssorted

  HaleySchuhl

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• check datatype and handle differently

  HaleySchuhl

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• Update read_geotif.py

  HaleySchuhl

  committed
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Commits on Apr 23, 2024

• rearrage function and change handling of rgb tifs

  HaleySchuhl

  committed
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• try adding rescaling for printing purposes

  HaleySchuhl

  committed
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• Update test_geospatial_read_geotif.py

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• add doc image of rgb visualization

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• add screenshot to doc page

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• Update read_geotif.py

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• Update conftest.py

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• Create rgb.tif

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• deepsource fixes

  HaleySchuhl

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• rescale so that debug=print also works witht multispec

  HaleySchuhl

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• add multispec example to docs

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Commits on Apr 24, 2024

• mask background with 0s to avoid warnings

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• syntax fix and clarifications on doc page

  HaleySchuhl

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• Update changelog.md

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• remove unused import

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Commits on Apr 25, 2024

• small docs clarification about returned object type

  HaleySchuhl

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• typo read_geotif

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Commits on Apr 26, 2024

• Update read_geotif.md

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• reorder RGB getting returned not just the thing getting debugged

  HaleySchuhl

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Commits on May 18, 2024

• Removed trailing whitespaces

  nfahlgren

  committed
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• Remove unnecessary else

  nfahlgren

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• in works on dict directly, remove keys list

  nfahlgren

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• Update docstrings to numpy format

  nfahlgren

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• Create helper function to simplify logical block

  nfahlgren

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• Refactor to treat all images as Spectral_data

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• Update test assertion due to data type change

  nfahlgren

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• Change default band order to BGR

  nfahlgren

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• Revise docs

  nfahlgren

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• Restore versioning removed in PR

  nfahlgren

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• Remove unused enumeration

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