Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add napari assisted warp #28

Open
wants to merge 8 commits into
base: main
Choose a base branch
from
Open

Conversation

k034b363
Copy link
Contributor

@k034b363 k034b363 commented Dec 4, 2024

Describe your changes
A longer goal is to be able to parallelize warping of non-georeferenced geospatial images to a common reference image using plantcv's warp function in order to approximate georeferencing in the raster coordinate system. This PR adds a function to collect and store points clicked in napari to compare as reference points in warp across images.

Type of update
Is this a:

  • New feature or feature enhancement

Associated issues
Contributes to, but does not close #26

Additional context
Add any other context about the problem here.

For the reviewer
See this page for instructions on how to review the pull request.

  • PR functionality reviewed in a Jupyter Notebook
  • All tests pass
  • Test coverage remains 100%
  • Documentation tested
  • New documentation pages added to plantcv-geospatial/mkdocs.yml
  • Changes to function input/output signatures added to changelog.md
  • Code reviewed
  • PR approved

@k034b363 k034b363 linked an issue Dec 4, 2024 that may be closed by this pull request
@k034b363 k034b363 added enhancement New feature or request Work in Progress labels Dec 4, 2024
@k034b363 k034b363 self-assigned this Dec 4, 2024
Copy link

deepsource-io bot commented Dec 4, 2024

Here's the code health analysis summary for commits 798a570..350b2c2. View details on DeepSource ↗.

Analysis Summary

AnalyzerStatusSummaryLink
DeepSource Python LogoPython✅ SuccessView Check ↗
DeepSource Test coverage LogoTest coverage❌ Failure
❗ 3 occurences introduced
View Check ↗

Code Coverage Report

MetricAggregatePython
Branch Coverage100%100%
Composite Coverage98.6% (down 1.4% from main)98.6% (down 1.4% from main)
Line Coverage98.6% (down 1.4% from main)98.6% (down 1.4% from main)
New Branch Coverage100%100%
New Composite Coverage92.2%92.2%
New Line Coverage92.2%92.2%

💡 If you’re a repository administrator, you can configure the quality gates from the settings.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request Work in Progress
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Add napari-assisted warp
1 participant