update CI and toml

.github/workflows/continuous-integration.yml

@@ -32,18 +32,24 @@ jobs:
       run: |
         sudo apt-get install --no-install-recommends libyaml-dev libegl1-mesa libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-shape0 libxcb-cursor0 xserver-xephyr xvfb
         python -m pip install --upgrade pip
-        pip install flake8 pytest pytest-cov pytest-qt pytest-xvfb ipython
+        pip install flake8 pytest pytest-cov pytest-qt pytest-xvfb ipython anyio
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: Test and generate coverage report
+    - uses: tlambert03/setup-qt-libs@v1
+    - name: Install plantcv-annotate
       # Run coverage analysis on pytest tests
       run: |
         pip install .
-        py.test --cov-report=xml --cov=./
+        pip uninstall -y opencv-python
+        pip install opencv-python-headless
+    - name: Tests
+      uses: aganders3/headless-gui@v2
+      with:
+        run: pytest --cov-report=xml --cov=./
     - name: Upload coverage to Deepsource
       uses: deepsourcelabs/test-coverage-action@master
       with:

pyproject.toml

@@ -27,7 +27,12 @@ classifiers = [
     "License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)",
     "Intended Audience :: Science/Research",
 ]
+[project.optional-dependencies]
+test = [
+    "pytest",
+    "pytest-qt"
+]
 [project.urls]
 Homepage = "https://plantcv.org"
 Documentation = "https://plantcv.readthedocs.io"
-Repository = "https://github.com/danforthcenter/plantcv-annotate"
+Repository = "https://github.com/danforthcenter/plantcv-annotate"