33 napari extract and format data for naive bayes #267
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: builds | |
| on: | |
| push: | |
| # Run when main is updated | |
| branches: [ main ] | |
| pull_request: | |
| # Run on pull requests against main | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11'] | |
| os: [ubuntu-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python-version }} | |
| DISPLAY: ':99.0' | |
| steps: | |
| - uses: actions/checkout@main | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@main | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install --no-install-recommends libyaml-dev libegl1-mesa libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-shape0 libxcb-cursor0 xserver-xephyr | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov pytest-qt pytest-xvfb ipython anyio | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - uses: tlambert03/setup-qt-libs@v1 | |
| - name: Install plantcv-annotate | |
| # Run coverage analysis on pytest tests | |
| run: | | |
| pip install . | |
| pip uninstall -y opencv-python | |
| pip install opencv-python-headless | |
| - name: Tests | |
| uses: aganders3/[email protected] | |
| with: | |
| xvfb-screen-size: 1280x720x24 | |
| run: pytest --cov-report=xml --cov=./ | |
| - name: Upload coverage to Deepsource | |
| uses: deepsourcelabs/test-coverage-action@master | |
| with: | |
| key: python | |
| coverage-file: coverage.xml | |
| dsn: ${{ secrets.DEEPSOURCE_DSN }} | |
| env: | |
| DEEPSOURCE_DSN: ${{ secrets.DEEPSOURCE_DSN }} |