Merge pull request #74 from catalystneuro/000947/demo

Add demo notebook for `000947`
dandi · Apr 5, 2024 · 232db9a · 232db9a
2 parents 84617a5 + 642572e
commit 232db9a
Show file tree

Hide file tree

Showing 5 changed files with 1,337 additions and 0 deletions.
diff --git a/000947/TurnerLab/public_demo/000947_demo.ipynb b/000947/TurnerLab/public_demo/000947_demo.ipynb
diff --git a/000947/TurnerLab/public_demo/README.md b/000947/TurnerLab/public_demo/README.md
@@ -0,0 +1,21 @@
+# Single-Unit Activity from Internal Globus Pallidus of Macaques During Reaching tutorial
+
+This example notebook demonstrates how to access the dataset published at [DANDI:000947](https://dandiarchive.org/dandiset/000947/draft).
+
+This example session contains recordings of single-unit activity from globus pallidus-internus (GPi) in a parkinsonian 
+monkey performing a choice reaction time reaching task.
+
+## Installing the dependencies
+
+```bash
+git clone https://github.com/dandi/example-notebooks
+cd example-notebooks/000947/TurnerLab/public_demo
+conda env create --file environment.yml
+conda activate turnerlab_000947_demo
+```
+
+## Running the notebook
+
+```bash
+jupyter notebook 000947_demo.ipynb
+```
diff --git a/000947/TurnerLab/public_demo/environment.yml b/000947/TurnerLab/public_demo/environment.yml
@@ -0,0 +1,14 @@
+name: turnerlab_000947_demo
+channels:
+    - conda-forge
+dependencies:
+    - python==3.11
+    - ipywidgets
+    - pip
+    - pip:
+      - dandi
+      - jupyter
+      - plotly
+      - pynwb
+      - remfile
+      - pynapple
diff --git a/000947/TurnerLab/public_demo/images/neurosift_psth.png b/000947/TurnerLab/public_demo/images/neurosift_psth.png
diff --git a/000947/TurnerLab/public_demo/images/neurosift_units.png b/000947/TurnerLab/public_demo/images/neurosift_units.png