nf-core CI

refactor: Increase parameterization in preprocess and host-removal #73

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Triggered via pull request March 24, 2024 14:05

jvfe

synchronize #31

run-single

Status Success

Total duration 5m 4s

Artifacts –

ci.yml

on: pull_request

Matrix: Run pipeline with test data

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4 warnings

Run pipeline with test data (docker, latest-everything)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (docker, latest-everything)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run pipeline with test data (singularity, latest-everything)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, nf-core/setup-nextflow@v1, eWaterCycle/setup-singularity@v5. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (singularity, latest-everything)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/