style: Add black to test/file_finder

dalmolingroup · Mar 30, 2024 · a8bac1e · a8bac1e
1 parent 5893cd2
commit a8bac1e
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Showing 3 changed files with 3 additions and 7 deletions.
diff --git a/microview/file_finder.py b/microview/file_finder.py
@@ -107,7 +107,9 @@ def detect_report_type(report_paths: List[Path], console) -> List[Sample]:
 
     # TODO: Improve Kraken validation
     kraken_validated = [
-        get_validation_dict(report, format="tsv", checks=[checks.table_dimensions(num_fields=6)])
+        get_validation_dict(
+            report, format="tsv", checks=[checks.table_dimensions(num_fields=6)]
+        )
         for report in report_paths
     ]
     kraken_reports = [

diff --git a/tests/test_file_finder.py b/tests/test_file_finder.py
@@ -28,14 +28,12 @@ def test_detect_centrifuge(get_centrifuge_data):
 
 
 def test_validate_source_table(get_contrast_data):
-
     validated = get_validation_dict(get_contrast_data, schema=contrast_table_schema)
 
     assert validated["errors"] == 0
 
 
 def test_invalidate_source_table(get_failing_contrast_data):
-
     validated = get_validation_dict(
         get_failing_contrast_data, schema=contrast_table_schema
     )

diff --git a/tests/test_parse_taxonomy.py b/tests/test_parse_taxonomy.py
@@ -7,30 +7,26 @@
 
 
 def test_get_taxon_counts(parsed_stats):
-
     results = get_taxon_counts(parsed_stats)
 
     assert results["sample1"]["tax1"] == 5
     assert results["sample2"]["tax2"] == 10
 
 
 def test_build_taxonomy_stats(parsed_stats):
-
     n_reads = get_read_assignment(parsed_stats)
 
     assert n_reads["sample2"]["assigned"] == 93.75
     assert n_reads["sample2"]["unassigned"] == 6.25
 
 
 def test_get_common_taxas(all_sample_counts):
-
     most_common = get_common_taxas(all_sample_counts)
 
     assert most_common["sample2"]["tax2"] == 66.67
 
 
 def test_calculate_abund_diver(all_sample_counts):
-
     abund_div_df = calculate_abund_diver(all_sample_counts)
 
     assert round(abund_div_df[0]["Shannon Diversity"][1], 2) == 0.92