This repository serves as a hub for general and supplementary information related to the manuscript "MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences".
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MEDUSA: The main repository for the research project, it contains the pipeline's Snakemake rules (The Snakefile), as well as instructions on how to execute the workflow.
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annotate: A repository containing the Annotate script implemented by the pipeline, which is responsible for annotating each query in the alignment output.
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ComparisonMEGANxMEDUSA: Contains the scripts used to compare the taxonomic and functional results produced by both MEDUSA and MEGAN as well as the data that supports the article.
- Supplementary tables, notes, as well as details for installing and running the pipeline can be found in the 'SupplementaryMaterialFrontiers' PDF available as an adjacent file in this repository.