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(2/N) Pre-release data QC #1280

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(2/N) Pre-release data QC

(2/N) Pre-release data QC #1280

Run time

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Job Run time
Build and Publish Image
1h 50m 26s
Run Analysis (Molecular Subtyping - MB, molecular-subtyping-MB/run-molecular-subtyping-mb.sh, 0)
11m 7s
Run Analysis (Molecular Subtyping - CRANIO, molecular-subtyping-CRANIO/run-molecular-subtyping-cr...
7m 56s
Run Analysis (Molecular Subtyping - EPN, molecular-subtyping-EPN/run-molecular-subtyping-EPN.sh)
8m 58s
Run Analysis (Molecular Subtyping - EMBRYONAL, molecular-subtyping-embryonal/run-embryonal-subtyp...
8m 55s
Run Analysis (Molecular Subtyping - CHORDOMA, molecular-subtyping-chordoma/run-molecular-subtypin...
9m 53s
Run Analysis (Molecular Subtyping - EWS, molecular-subtyping-EWS/run_subtyping.sh)
9m 12s
Run Analysis (Molecular Subtyping - NEUROCYTOMA, molecular-subtyping-neurocytoma/run_subtyping.sh)
7m 54s
Run Analysis (Molecular Subtyping - HGG, molecular-subtyping-HGG/run-molecular-subtyping-HGG.sh)
11m 24s
Run Analysis (Molecular Subtyping - LGG, molecular-subtyping-LGAT/run_subtyping.sh, 0)
7m 58s
Run Analysis (Molecular Subtyping - NBL, molecular-subtyping-NBL/run-molecular-subtyping-NBL.sh)
8m 56s
Run Analysis (Molecular Subtyping - PATHOLOGY/COMPILE, molecular-subtyping-pathology/run-subtypin...
8m 21s
Run Analysis (Molecular Subtyping - INTEGRATE (+ add cancer groups), molecular-subtyping-integrat...
9m 6s
Run Analysis (Molecular Subtyping - ATRT, molecular-subtyping-ATRT/run-molecular-subtyping-ATRT.sh)
7m 50s
Run Analysis (Independent Specimens, independent-samples/run-independent-samples.sh)
9m 38s
Run Analysis (Independent Specimens pre-release, independent-samples/run-independent-samples.sh, 1)
11m 4s
Run Analysis (TP53/NF1 scores, tp53_nf1_score/run_classifier.sh, 0)
10m 39s
Run Analysis (Fusion filtering, fusion_filtering/run_fusion_merged.sh)
11m 0s
Run Analysis (Fusion summary, fusion-summary/run-new-analysis.sh, 0)
8m 43s
Run Analysis (Consensus CN Manta, copy_number_consensus_call_manta/run_consensus_call.sh)
11m 48s
Run Analysis (Consensus CN, copy_number_consensus_call/run_consensus_call.sh)
10m 33s
Run Analysis (Consensus CN annotation, focal-cn-file-preparation/run-prepare-cn.sh, 1)
15m 24s
Run Analysis (TMB calculation, tmb-calculation/run_tmb_calculation.sh)
8m 16s
Run Analysis (ENSEMBL Gene matching, gene_match/run-gene-mapping.sh)
10m 47s
Run Analysis (RNA-Seq Expression Summary stats, rna-seq-expression-summary-stats/run-rna-seq-expr...
37m 3s
Run Analysis (Fusion frequency tables, fusion-frequencies/run-frequencies.sh)
9m 5s
Run Analysis (SNV frequency tables, snv-frequencies/run-snv-frequencies.sh)
7m 52s
Run Analysis (CNV frequency tables, cnv-frequencies/run-cnv-frequencies-analysis.sh)
11m 29s
Run Analysis (RNA-Seq batch correction, rnaseq-batch-correct/run_ruvseq.sh)
13m 44s
6h 55m 1s