Adding Settings Menu

[ronjakrg]

Description

fixes #550
This feature enables the user to access some settings in PROTzilla by the gear icon at the top right, yay! All settings can be loaded, viewed, changed and saved.

Changes

Added settings as a new Django app
Added and changed some HTMLs as well as methods in views.py to display the setting forms and plot preview
Added general.yaml and plots.yaml to user_data/settings/ to store the user's settings
Added last_view and run_name to most of the view functions to enable reloading the last view after saving or canceling the settings
Moved methods parameter_from_post and convert_str_if_possible from ui/runs/views_helper.py to protzilla/utilities/utilities.py

Testing

PR checklist

Development

• If necessary, I have updated the documentation (README, docstrings, etc.)
• If necessary, I have created / updated tests.

Mergeability

• main-branch has been merged into local branch to resolve conflicts
• The tests and linter have passed AFTER local merge
• The code has been formatted with black

Code review

• I have self-reviewed my code.
• At least one other developer reviewed and approved the changes

[github-actions]

Coverage report

Click to see where and how coverage changed

File	Statements	Missing	Coverage	Coverage (new stmts)	Lines missing
protzilla
run.py
run_helper.py
protzilla/data_analysis
differential_expression_helper.py					125, 143
differential_expression_kruskal_wallis.py					227
differential_expression_mann_whitney.py					266
differential_expression_t_test.py
plots.py
protein_graphs.py
ptm_analysis.py					56, 123-125
protzilla/data_integration
di_plots.py
protzilla/data_preprocessing
outlier_detection.py
plots.py
transformation.py
protzilla/importing
ms_data_import.py					122, 276
protzilla/methods
data_analysis.py					21, 174, 250, 283, 308, 351, 916, 935
data_preprocessing.py
importing.py					144
protzilla/utilities
transform_dfs.py
utilities.py					142-152, 156-172
ui/main
settings.py					131
ui/runs
fields.py
views.py					21, 41, 48, 72-73, 181, 258, 292, 458-459
views_helper.py
ui/runs/forms
data_analysis.py					318-322, 379, 409, 445, 468, 1183, 1221, 1243
ui/settings
plot_template.py					13, 16, 20, 23, 51, 56, 58-69, 72-74
Project Total

The report is truncated to 25 files out of 56. To see the full report, please visit the workflow summary page.

This report was generated by python-coverage-comment-action