Merge branch 'refs/heads/dev' into peptides

# Conflicts:
#	protzilla/constants/location_mapping.py
#	protzilla/constants/workflow_meta.json
#	protzilla/importing/peptide_import.py
#	protzilla/methods/importing.py
#	tests/protzilla/data_preprocessing/test_filter_proteins.py
#	tests/protzilla/data_preprocessing/test_filter_samples.py
#	tests/protzilla/data_preprocessing/test_outlier_detection.py
#	tests/protzilla/data_preprocessing/test_transformation.py
#	tests/protzilla/importing/test_peptide_import.py
#	tests/ui/test_views.py
#	ui/runs/forms/importing.py

.github/workflows/ci.yml

@@ -42,12 +42,12 @@ jobs:
       
       - name: Analysing the code with autoflake
         run: python -m autoflake --in-place --remove-all-unused-imports --remove-unused-variables --expand-star-imports --ignore-init-module-imports $(git ls-files '*.py')
-      
+
       - name: run tests, build coverage file
         run: |
-          export PYTHONPATH=. pytest
-          pytest --cache-clear --cov=. --cov-branch --cov-report term-missing tests/
-      
+          export PYTHONPATH=. pytest 
+          pytest --cache-clear --cov=. --cov-report term-missing tests/
+
       - name: format with black
         run: python -m black .
 

README.md

@@ -26,7 +26,7 @@ Once the script has done most of its work, something along the lines of `Startin
 
 ## Start-Guide - a little more technical
 > [!NOTE]
-> For further information on how to contribute on PROTzilla read our [dev-guide](./docs/dev-guide.md).
+> For further information on how to contribute on PROTzilla read our [dev-guide](https://github.com/cschlaffner/PROTzilla2/wiki).
 
 PROTzilla2 uses Python 3.11 and conda to manage the environment and pip for installing packages.