SLURM

This repository is the simplest way to create a high-availability SLURM cluster on Crusoe Cloud. To get started, create a file named terraform.tfvars with the cluster parameters. For example .tfvars files, see the examples directory.

terraform init
terraform apply

What is provided by the cluster?

By default, this solution will create a high-availability SLURM cluster with:

• 2 c1a.16x head nodes
• 2 c1a.16x login nodes
• 1 s1a.80x nfs node
• n compute nodes of any instance type.

Storage

This solution currently supports four tiers of storage:

Local Scratch

Each slurm-compute-node instance supports up to 7.5 TiB of local scratch storage, depending on the instance type. If present, scratch storage is located at /scratch/local. The local scratch storage is erased whenever the compute node is stopped.

The local scratch size on common compute node instance types are:

• a40.8x: 7.5 TiB
• 100.8x: 7.5 TiB
• a100-80gb.8x: 7.5 TiB
• a100-80gb-sxm-ib.8x: 7.5 TiB
• h100-80gb-sxm-ib.8x: 7.5 TiB
• l40s-48gb.8x: None
• c1a.176x: None

Shared Scratch

Each cluster supports up to 51.2 TiB of shared scratch storage, depending on the instance type of slurm-nfs-node-0. This scratch storage is located at /scratch/shared. The shared scratch storage is erased whenever slurm-nfs-node-0 is stopped.

The slurm_nfs_node_type variable can optionally be set in the terraform.tfvars file to configure the instance type used to create slurm-nfs-node-0. If left unconfigured, this will default to s1a.80x.

The remote scratch size on common nfs node instance types are:

• s1a.80x: 51.2 TiB
• s1a.40x: 25.6 TiB
• c1a.176x: None

Shared Home Directory

The slurm-nfs-node-0 node exports a persistent /home directory that is mounted by all login nodes and all compute nodes. This offers up to 10 TiB of persistent shared storage.

The slurm_nfs_home_size variable can optionally be set in the terraform.tfvars file to configure the size of the /home nfs share. If left unconfigured, this will default to 10 TiB. Note that 10 TiB is the maximum currently supported by Crusoe Cloud.

Note: the lifecycle of the shared home directory is tied to the lifecycle of the cluster. Deleting the cluster will delete the shared home directory. A seperate shared data directory is recommended for storing critical data.

Shared Data Directory

The slurm_shared_volumes variable can be used to add additional shared volumes storage to the cluster. This is the recommended way to add high-performance persistent file storage to your cluster.

slurm_shared_volumes = [{
  id = "8146e3ef-4192-4f59-b2d6-6a8b3dfe5cf3"
  name = "data-01"
  mode = "read-write"
  mount_point = "/mnt/data-01"
}]

User Management

To add additional users to your cluster, configure the slurm_users variable in your terraform.tfvars file and run terraform apply. The following example adds three additional users user1, user2, and user3 to the slurm cluster.

# slurm users configuration
slurm_users = [{
  name = "user1"
  uid = 1001
  ssh_pubkey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIIjPRr0iVR4mgzJy0ehnM5hWX4O86hM1bVTgdi5g3nkZ [email protected]"
}, {
  name = "user2"
  uid = 1002
  ssh_pubkey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIIjPRr0iVR4mgzJy0ehnM5hWX4O86hM1bVTgdi5g3nkZ [email protected]"
}, {
  name = "user3"
  uid = 1003
  ssh_pubkey = "ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIIjPRr0iVR4mgzJy0ehnM5hWX4O86hM1bVTgdi5g3nkZ [email protected]"
}]

Enroot and Pyxis

This solution provides support for NVIDIA Enroot and Pyxis.

srun --container-image=<image> <cmd>

MPI

This solution includes PMIx support for running Open MPI applications.

srun --mpi=pmix <cmd>

For example, this can be used to run the nccl-tests included in the ubuntu22.04-nvidia-slurm image.

# Run 2-node NCCL AllReduce Benchmark using RDMA Transport.
export NCCL_IB_HCA=^mlx5_0:1
srun -N 2 --ntasks-per-node=8 --gres=gpu:8 --cpus-per-task=22 --mpi=pmix /opt/nccl-tests/build/all_reduce_perf -b 1M -e 1G -f 2 -g 1

# Run 2-node NCCL AllReduce Benchmark using Ethernet Transport.
export NCCL_IB_DISABLE=1
export NCCL_IBEXT_DISABLE=1
srun -N 2 --ntasks-per-node=8 --gres=gpu:8 --cpus-per-task=22 --mpi=pmix /opt/nccl-tests/build/all_reduce_perf -b 1M -e 1G -f 2 -g 1

How do I handle a head node outage?

This solution utilizes a secondary head-node that will take over within 10 seconds if the primary head-node stops responding. As long as at least one head-node is still responsive, the cluster will remain usable.

How do I handle a nfs node outage?

Note that NFS is not deployed in a high-availability configuration. If slurm-nfs-node-0 goes down, then none of the login nodes or compute nodes will be able to mount the /home directory. This will prevent users from logging in to any slurm-login-node or slurm-compute-node. The cluster will recover gracefully once slurm-nfs-node-0 is brought back online. During this time, it is still possible to login to any of the nodes as the root user.

How do I handle a login node outage?

If one of the login nodes goes offline, the other login nodes will remain fully functional. As long as cluster users store data in their home directory, which is backed by a nfs share, they should be able to ssh into another login node and continue using the cluster.

How do I handle a compute node outage?

When a compute node is rebooted or stops responding for more than 5 minutes, it will be marked as DOWN.

sinfo
PARTITION AVAIL  TIMELIMIT  NODES  STATE NODELIST
batch*       up   infinite      1  down* slurm-compute-node-0
batch*       up   infinite      7   idle slurm-compute-node-[1-7]

Once the compute node is back online, it will automatically rejoin the cluster as long as it is healthy.

Once the compute node has been returned to the cluster, it should enter an IDLE state.

sinfo
PARTITION AVAIL  TIMELIMIT  NODES  STATE NODELIST
batch*       up   infinite      8   idle slurm-compute-node-[0-7]