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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname GeneNMF | ||
| %global packver 0.6.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.6.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Non-Negative Matrix Factorization for Single-Cell Omics | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 4.3.0 | ||
| Requires: R-core >= 4.3.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-Seurat >= 4.3.0 | ||
| BuildRequires: R-CRAN-RcppML | ||
| BuildRequires: R-CRAN-Matrix | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-methods | ||
| BuildRequires: R-utils | ||
| BuildRequires: R-CRAN-cluster | ||
| BuildRequires: R-CRAN-lsa | ||
| BuildRequires: R-CRAN-irlba | ||
| BuildRequires: R-CRAN-pheatmap | ||
| BuildRequires: R-CRAN-viridis | ||
| Requires: R-CRAN-Seurat >= 4.3.0 | ||
| Requires: R-CRAN-RcppML | ||
| Requires: R-CRAN-Matrix | ||
| Requires: R-stats | ||
| Requires: R-methods | ||
| Requires: R-utils | ||
| Requires: R-CRAN-cluster | ||
| Requires: R-CRAN-lsa | ||
| Requires: R-CRAN-irlba | ||
| Requires: R-CRAN-pheatmap | ||
| Requires: R-CRAN-viridis | ||
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| %description | ||
| A collection of methods to extract gene programs from single-cell gene | ||
| expression data using non-negative matrix factorization (NMF). 'GeneNMF' | ||
| contains functions to directly interact with the 'Seurat' toolkit and | ||
| derive interpretable gene program signatures. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,61 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname StuteTest | ||
| %global packver 1.0.2 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0.2 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Stute (1997) Linearity Test | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildRequires: R-CRAN-Rcpp >= 1.0.12 | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-plm | ||
| BuildRequires: R-CRAN-rnames | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-CRAN-RcppArmadillo | ||
| Requires: R-CRAN-Rcpp >= 1.0.12 | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-plm | ||
| Requires: R-CRAN-rnames | ||
| Requires: R-stats | ||
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| %description | ||
| Non-parametric test, originally proposed by Stute (1997) | ||
| <https://www.jstor.org/stable/2242560>, that the expectation of a | ||
| dependent variable Y given an independent variable D is linear in D. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
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||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,54 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname aka | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Define Aliases for R Expressions | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
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| %description | ||
| Create aliases for other R names or arbitrarily complex R expressions. | ||
| Accessing the alias acts as-if the aliased expression were invoked | ||
| instead, and continuously reflects the current value of that expression: | ||
| updates to the original expression will be reflected in the alias; and | ||
| updates to the alias will automatically be reflected in the original | ||
| expression. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,80 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname bsvarSIGNs | ||
| %global packver 1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Bayesian SVARs with Sign, Zero, and Narrative Restrictions | ||
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| License: GPL (>= 3) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 2.10 | ||
| Requires: R-core >= 2.10 | ||
| BuildRequires: R-CRAN-Rcpp >= 1.0.12 | ||
| BuildRequires: R-CRAN-RcppArmadillo | ||
| BuildRequires: R-CRAN-bsvars | ||
| BuildRequires: R-CRAN-RcppProgress | ||
| BuildRequires: R-CRAN-R6 | ||
| Requires: R-CRAN-Rcpp >= 1.0.12 | ||
| Requires: R-CRAN-RcppArmadillo | ||
| Requires: R-CRAN-bsvars | ||
| Requires: R-CRAN-RcppProgress | ||
| Requires: R-CRAN-R6 | ||
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| %description | ||
| Implements state-of-the-art algorithms for the Bayesian analysis of | ||
| Structural Vector Autoregressions (SVARs) identified by sign, zero, and | ||
| narrative restrictions. The core model is based on a flexible Vector | ||
| Autoregression with estimated hyper-parameters of the Minnesota prior and | ||
| the dummy observation priors as in Giannone, Lenza, Primiceri (2015) | ||
| <doi:10.1162/REST_a_00483>. The sign restrictions are implemented | ||
| employing the methods proposed by Rubio-Ramírez, Waggoner & Zha (2010) | ||
| <doi:10.1111/j.1467-937X.2009.00578.x>, while identification through sign | ||
| and zero restrictions follows the approach developed by Arias, | ||
| Rubio-Ramírez, & Waggoner (2018) <doi:10.3982/ECTA14468>. Furthermore, our | ||
| tool provides algorithms for identification via sign and narrative | ||
| restrictions, in line with the methods introduced by Antolín-Díaz and | ||
| Rubio-Ramírez (2018) <doi:10.1257/aer.20161852>. Users can also estimate a | ||
| model with sign, zero, and narrative restrictions imposed at once. The | ||
| package facilitates predictive and structural analyses using impulse | ||
| responses, forecast error variance and historical decompositions, | ||
| forecasting and conditional forecasting, as well as analyses of structural | ||
| shocks and fitted values. All this is complemented by colourful plots, | ||
| user-friendly summary functions, and comprehensive documentation. The | ||
| 'bsvarSIGNs' package is aligned regarding objects, workflows, and code | ||
| structure with the R package 'bsvars' by Woźniak (2024) | ||
| <doi:10.32614/CRAN.package.bsvars>, and they constitute an integrated | ||
| toolset. | ||
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|
||
| %prep | ||
| %setup -q -c -n %{packname} | ||
|
|
||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
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||
| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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