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cran4linux · Dec 15, 2024 · b6a2f54 · b6a2f54
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Showing 18 changed files with 98 additions and 76 deletions.
diff --git a/specs/R-CRAN-CausalQueries.spec b/specs/R-CRAN-CausalQueries.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  CausalQueries
-%global packver   1.2.1
+%global packver   1.3.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.2.1
+Version:          1.3.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          Make, Update, and Query Binary Causal Models
 

diff --git a/specs/R-CRAN-DiscreteFDR.spec b/specs/R-CRAN-DiscreteFDR.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  DiscreteFDR
-%global packver   2.0.1
+%global packver   2.1.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          2.0.1
+Version:          2.1.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests
 
@@ -17,13 +17,13 @@ Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
 BuildRequires:    R-devel >= 3.00
 Requires:         R-core >= 3.00
 BuildRequires:    R-CRAN-Rcpp >= 1.0.12
-BuildRequires:    R-CRAN-DiscreteTests 
+BuildRequires:    R-CRAN-DiscreteTests >= 0.2.1
 BuildRequires:    R-CRAN-lifecycle 
 BuildRequires:    R-CRAN-checkmate 
 BuildRequires:    R-CRAN-DiscreteDatasets 
 BuildRequires:    R-CRAN-RcppArmadillo 
 Requires:         R-CRAN-Rcpp >= 1.0.12
-Requires:         R-CRAN-DiscreteTests 
+Requires:         R-CRAN-DiscreteTests >= 0.2.1
 Requires:         R-CRAN-lifecycle 
 Requires:         R-CRAN-checkmate 
 Requires:         R-CRAN-DiscreteDatasets 

diff --git a/specs/R-CRAN-SimDesign.spec b/specs/R-CRAN-SimDesign.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  SimDesign
-%global packver   2.17.1
+%global packver   2.18
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          2.17.1
+Version:          2.18
 Release:          1%{?dist}%{?buildtag}
 Summary:          Structure for Organizing Monte Carlo Simulation Designs
 
@@ -14,8 +14,8 @@ URL:              https://cran.r-project.org/package=%{packname}
 Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
 
 
-BuildRequires:    R-devel >= 3.5.0
-Requires:         R-core >= 3.5.0
+BuildRequires:    R-devel >= 4.1.0
+Requires:         R-core >= 4.1.0
 BuildArch:        noarch
 BuildRequires:    R-CRAN-pbapply >= 1.3.0
 BuildRequires:    R-methods 

diff --git a/specs/R-CRAN-SoilConservation.spec b/specs/R-CRAN-SoilConservation.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  SoilConservation
-%global packver   1.0.0
+%global packver   1.0.1
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.0.0
+Version:          1.0.1
 Release:          1%{?dist}%{?buildtag}
 Summary:          Soil and Water Conservation
 

diff --git a/specs/R-CRAN-Virusparies.spec b/specs/R-CRAN-Virusparies.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  Virusparies
-%global packver   1.0.0
+%global packver   1.1.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.0.0
+Version:          1.1.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          Visualize and Process Output from 'VirusHunterGatherer'
 
@@ -14,8 +14,8 @@ URL:              https://cran.r-project.org/package=%{packname}
 Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
 
 
-BuildRequires:    R-devel >= 2.10
-Requires:         R-core >= 2.10
+BuildRequires:    R-devel >= 3.5
+Requires:         R-core >= 3.5
 BuildArch:        noarch
 BuildRequires:    R-CRAN-chromote 
 BuildRequires:    R-CRAN-cowplot 

diff --git a/specs/R-CRAN-arules.spec b/specs/R-CRAN-arules.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  arules
-%global packver   1.7-8
+%global packver   1.7-9
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.7.8
+Version:          1.7.9
 Release:          1%{?dist}%{?buildtag}
 Summary:          Mining Association Rules and Frequent Itemsets
 

diff --git a/specs/R-CRAN-bqror.spec b/specs/R-CRAN-bqror.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  bqror
-%global packver   1.7.0
+%global packver   1.7.1
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.7.0
+Version:          1.7.1
 Release:          1%{?dist}%{?buildtag}
 Summary:          Bayesian Quantile Regression for Ordinal Models
 

diff --git a/specs/R-CRAN-ctrdata.spec b/specs/R-CRAN-ctrdata.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  ctrdata
-%global packver   1.19.5
+%global packver   1.20.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.19.5
+Version:          1.20.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          Retrieve and Analyze Clinical Trials in Public Registers
 
@@ -24,7 +24,6 @@ BuildRequires:    R-CRAN-httr
 BuildRequires:    R-CRAN-clipr 
 BuildRequires:    R-CRAN-xml2 
 BuildRequires:    R-CRAN-stringi 
-BuildRequires:    R-CRAN-tibble 
 BuildRequires:    R-CRAN-lubridate 
 BuildRequires:    R-CRAN-jqr 
 BuildRequires:    R-CRAN-dplyr 
@@ -33,14 +32,14 @@ BuildRequires:    R-CRAN-V8
 BuildRequires:    R-CRAN-readr 
 BuildRequires:    R-CRAN-digest 
 BuildRequires:    R-CRAN-countrycode 
+BuildRequires:    R-CRAN-htmlwidgets 
 Requires:         R-CRAN-curl >= 5.1.0
 Requires:         R-CRAN-nodbi >= 0.10.7
 Requires:         R-CRAN-jsonlite 
 Requires:         R-CRAN-httr 
 Requires:         R-CRAN-clipr 
 Requires:         R-CRAN-xml2 
 Requires:         R-CRAN-stringi 
-Requires:         R-CRAN-tibble 
 Requires:         R-CRAN-lubridate 
 Requires:         R-CRAN-jqr 
 Requires:         R-CRAN-dplyr 
@@ -49,6 +48,7 @@ Requires:         R-CRAN-V8
 Requires:         R-CRAN-readr 
 Requires:         R-CRAN-digest 
 Requires:         R-CRAN-countrycode 
+Requires:         R-CRAN-htmlwidgets 
 
 %description
 A system for querying, retrieving and analyzing protocol- and

diff --git a/specs/R-CRAN-dgpsi.spec b/specs/R-CRAN-dgpsi.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  dgpsi
-%global packver   2.4.0
+%global packver   2.5.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          2.4.0
+Version:          2.5.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          Interface to 'dgpsi' for Deep and Linked Gaussian Process Emulations
 
@@ -27,10 +27,16 @@ BuildRequires:    R-CRAN-patchwork
 BuildRequires:    R-CRAN-lhs 
 BuildRequires:    R-methods 
 BuildRequires:    R-stats 
-BuildRequires:    R-CRAN-bitops 
 BuildRequires:    R-CRAN-clhs 
 BuildRequires:    R-CRAN-dplyr 
 BuildRequires:    R-CRAN-uuid 
+BuildRequires:    R-CRAN-tidyr 
+BuildRequires:    R-CRAN-rlang 
+BuildRequires:    R-CRAN-lifecycle 
+BuildRequires:    R-CRAN-magrittr 
+BuildRequires:    R-CRAN-visNetwork 
+BuildRequires:    R-parallel 
+BuildRequires:    R-CRAN-kableExtra 
 Requires:         R-CRAN-reticulate >= 1.26
 Requires:         R-CRAN-benchmarkme >= 1.0.8
 Requires:         R-utils 
@@ -41,19 +47,25 @@ Requires:         R-CRAN-patchwork
 Requires:         R-CRAN-lhs 
 Requires:         R-methods 
 Requires:         R-stats 
-Requires:         R-CRAN-bitops 
 Requires:         R-CRAN-clhs 
 Requires:         R-CRAN-dplyr 
 Requires:         R-CRAN-uuid 
+Requires:         R-CRAN-tidyr 
+Requires:         R-CRAN-rlang 
+Requires:         R-CRAN-lifecycle 
+Requires:         R-CRAN-magrittr 
+Requires:         R-CRAN-visNetwork 
+Requires:         R-parallel 
+Requires:         R-CRAN-kableExtra 
 
 %description
 Interface to the 'python' package 'dgpsi' for Gaussian process, deep
 Gaussian process, and linked deep Gaussian process emulations of computer
 models and networks using stochastic imputation (SI). The implementations
 follow Ming & Guillas (2021) <doi:10.1137/20M1323771> and Ming,
 Williamson, & Guillas (2023) <doi:10.1080/00401706.2022.2124311> and Ming
-& Williamson (2023) <arXiv:2306.01212>. To get started with the package,
-see <https://mingdeyu.github.io/dgpsi-R/>.
+& Williamson (2023) <doi:10.48550/arXiv.2306.01212>. To get started with
+the package, see <https://mingdeyu.github.io/dgpsi-R/>.
 
 %prep
 %setup -q -c -n %{packname}

diff --git a/specs/R-CRAN-eHOF.spec b/specs/R-CRAN-eHOF.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  eHOF
-%global packver   1.15
+%global packver   1.16
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.15
+Version:          1.16
 Release:          1%{?dist}%{?buildtag}
 Summary:          Extended HOF (Huisman-Olff-Fresco) Models
 

diff --git a/specs/R-CRAN-frailtypack.spec b/specs/R-CRAN-frailtypack.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  frailtypack
-%global packver   3.6.4
+%global packver   3.6.5
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          3.6.4
+Version:          3.6.5
 Release:          1%{?dist}%{?buildtag}
 Summary:          Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints
 

diff --git a/specs/R-CRAN-gdverse.spec b/specs/R-CRAN-gdverse.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  gdverse
-%global packver   1.3
+%global packver   1.3-1
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.3
+Version:          1.3.1
 Release:          1%{?dist}%{?buildtag}
 Summary:          Analysis of Spatial Stratified Heterogeneity
 
@@ -16,7 +16,7 @@ Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
 
 BuildRequires:    R-devel >= 4.1.0
 Requires:         R-core >= 4.1.0
-BuildRequires:    R-CRAN-sdsfun >= 0.4.3
+BuildRequires:    R-CRAN-sdsfun >= 0.6.0
 BuildRequires:    R-CRAN-dplyr 
 BuildRequires:    R-CRAN-forcats 
 BuildRequires:    R-CRAN-ggplot2 
@@ -33,7 +33,7 @@ BuildRequires:    R-CRAN-tibble
 BuildRequires:    R-CRAN-tidyr 
 BuildRequires:    R-utils 
 BuildRequires:    R-CRAN-Rcpp 
-Requires:         R-CRAN-sdsfun >= 0.4.3
+Requires:         R-CRAN-sdsfun >= 0.6.0
 Requires:         R-CRAN-dplyr 
 Requires:         R-CRAN-forcats 
 Requires:         R-CRAN-ggplot2 

diff --git a/specs/R-CRAN-legendry.spec b/specs/R-CRAN-legendry.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  legendry
-%global packver   0.1.0
+%global packver   0.2.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          0.1.0
+Version:          0.2.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          Extended Legends and Axes for 'ggplot2'
 

diff --git a/specs/R-CRAN-lovecraftr.spec b/specs/R-CRAN-lovecraftr.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  lovecraftr
-%global packver   1.0.0
+%global packver   1.2.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.0.0
+Version:          1.2.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          A Collection of Lovecraftian Tales and Texts
 
@@ -17,6 +17,12 @@ Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
 BuildRequires:    R-devel >= 2.10
 Requires:         R-core >= 2.10
 BuildArch:        noarch
+BuildRequires:    R-CRAN-magrittr 
+BuildRequires:    R-CRAN-rvest 
+BuildRequires:    R-CRAN-stringr 
+Requires:         R-CRAN-magrittr 
+Requires:         R-CRAN-rvest 
+Requires:         R-CRAN-stringr 
 
 %description
 A curated collection of Howard Phillips Lovecraft's complete stories,

diff --git a/specs/R-CRAN-metan.spec b/specs/R-CRAN-metan.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  metan
-%global packver   1.18.0
+%global packver   1.19.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.18.0
+Version:          1.19.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          Multi Environment Trials Analysis
 
@@ -70,12 +70,12 @@ absolute scores by Olivoto et al. (2019a)
 Olivoto et al. (2019b) <doi:10.2134/agronj2019.03.0221>. Non-parametric
 methods includes superiority index by Lin & Binns (1988)
 <doi:10.4141/cjps88-018>, nonparametric measures of phenotypic stability
-by Huehn (1990) <https://link.springer.com/article/10.1007/BF00024241>,
-TOP third statistic by Fox et al. (1990) <doi:10.1007/BF00040364>.
-Functions for computing biometrical analysis such as path analysis,
-canonical correlation, partial correlation, clustering analysis, and tools
-for inspecting, manipulating, summarizing and plotting typical
-multi-environment trial data are also provided.
+by Huehn (1990) <doi:10.1007/BF00024241>, TOP third statistic by Fox et
+al. (1990) <doi:10.1007/BF00040364>. Functions for computing biometrical
+analysis such as path analysis, canonical correlation, partial
+correlation, clustering analysis, and tools for inspecting, manipulating,
+summarizing and plotting typical multi-environment trial data are also
+provided.
 
 %prep
 %setup -q -c -n %{packname}

diff --git a/specs/R-CRAN-rsmatrix.spec b/specs/R-CRAN-rsmatrix.spec
@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  rsmatrix
-%global packver   0.2.8
+%global packver   0.2.9
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          0.2.8
+Version:          0.2.9
 Release:          1%{?dist}%{?buildtag}
 Summary:          Matrices for Repeat-Sales Price Indexes