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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname COveR | ||
| %global packver 1.0.4 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0.4 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Clustering with Overlaps | ||
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| License: GPL (>= 2) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.2.3 | ||
| Requires: R-core >= 3.2.3 | ||
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| %description | ||
| Provide functions for overlaps clustering, fuzzy clustering and | ||
| interval-valued data manipulation. The package implement the following | ||
| algorithms: OKM (Overlapping Kmeans) from Cleuziou, G. (2007) | ||
| <doi:10.1109/icpr.2008.4761079> ; NEOKM (Non-exhaustive overlapping | ||
| Kmeans) from Whang, J. J., Dhillon, I. S., and Gleich, D. F. (2015) | ||
| <doi:10.1137/1.9781611974010.105> ; Fuzzy Cmeans from Bezdek, J. C. (1981) | ||
| <doi:10.1007/978-1-4757-0450-1> ; Fuzzy I-Cmeans from de A.T. De Carvalho, | ||
| F. (2005) <doi:10.1016/j.patrec.2006.08.014>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,82 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname Colossus | ||
| %global packver 1.1.4.2 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.1.4.2 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: "Risk Model Regression and Analysis with Complex Non-Linear Models" | ||
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| License: GPL (>= 3) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildRequires: R-CRAN-Rcpp | ||
| BuildRequires: R-CRAN-data.table | ||
| BuildRequires: R-parallel | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-utils | ||
| BuildRequires: R-CRAN-rlang | ||
| BuildRequires: R-CRAN-callr | ||
| BuildRequires: R-CRAN-stringr | ||
| BuildRequires: R-CRAN-processx | ||
| BuildRequires: R-CRAN-RcppEigen | ||
| BuildRequires: R-CRAN-testthat | ||
| Requires: R-CRAN-Rcpp | ||
| Requires: R-CRAN-data.table | ||
| Requires: R-parallel | ||
| Requires: R-stats | ||
| Requires: R-utils | ||
| Requires: R-CRAN-rlang | ||
| Requires: R-CRAN-callr | ||
| Requires: R-CRAN-stringr | ||
| Requires: R-CRAN-processx | ||
|
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| %description | ||
| Performs survival analysis using general non-linear models. Risk models | ||
| can be the sum or product of terms. Each term is the product of | ||
| exponential/linear functions of covariates. Additionally sub-terms can be | ||
| defined as a sum of exponential, linear threshold, and step functions. Cox | ||
| Proportional hazards | ||
| <https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson | ||
| <https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Grey | ||
| competing risks | ||
| <https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis> | ||
| regression are supported. This work was sponsored by NASA Grant | ||
| 80NSSC19M0161 through a subcontract from the National Council on Radiation | ||
| Protection and Measurements (NCRP). The computing for this project was | ||
| performed on the Beocat Research Cluster at Kansas State University, which | ||
| is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, | ||
| ACI-1440548, CHE-1726332, and NIH P20GM113109. | ||
|
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
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||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
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||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,62 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname LLMR | ||
| %global packver 0.1.1 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.1 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Interface for Large Language Model APIs in R | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-httr2 | ||
| BuildRequires: R-CRAN-purrr | ||
| BuildRequires: R-CRAN-rlang | ||
| Requires: R-CRAN-httr2 | ||
| Requires: R-CRAN-purrr | ||
| Requires: R-CRAN-rlang | ||
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| %description | ||
| A unified interface to interact with various Large Language Model (LLM) | ||
| APIs such as 'OpenAI' (see <https://platform.openai.com/docs/quickstart> | ||
| for details), 'Anthropic' (see | ||
| <https://docs.anthropic.com/en/api/getting-started> for details), 'Groq' | ||
| (see <https://console.groq.com/docs/api-reference> for details), and | ||
| 'Together AI' (see <https://docs.together.ai/docs/quickstart> for | ||
| details). Allows users to configure API parameters, send messages, and | ||
| retrieve responses seamlessly within R. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,87 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname MECfda | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
|
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Scalar-on-Function Regression with Measurement Error Correction | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 2.10 | ||
| Requires: R-core >= 2.10 | ||
| BuildArch: noarch | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-CRAN-stringr | ||
| BuildRequires: R-CRAN-lme4 | ||
| BuildRequires: R-CRAN-quantreg | ||
| BuildRequires: R-splines | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-MASS | ||
| BuildRequires: R-CRAN-Matrix | ||
| BuildRequires: R-CRAN-gss | ||
| BuildRequires: R-CRAN-corpcor | ||
| BuildRequires: R-CRAN-fda | ||
| BuildRequires: R-CRAN-magrittr | ||
| BuildRequires: R-methods | ||
| BuildRequires: R-CRAN-nlme | ||
| BuildRequires: R-CRAN-glme | ||
| BuildRequires: R-CRAN-mgcv | ||
| Requires: R-stats | ||
| Requires: R-CRAN-stringr | ||
| Requires: R-CRAN-lme4 | ||
| Requires: R-CRAN-quantreg | ||
| Requires: R-splines | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-MASS | ||
| Requires: R-CRAN-Matrix | ||
| Requires: R-CRAN-gss | ||
| Requires: R-CRAN-corpcor | ||
| Requires: R-CRAN-fda | ||
| Requires: R-CRAN-magrittr | ||
| Requires: R-methods | ||
| Requires: R-CRAN-nlme | ||
| Requires: R-CRAN-glme | ||
| Requires: R-CRAN-mgcv | ||
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| %description | ||
| Solve scalar-on-function linear models, including generalized linear mixed | ||
| effect model and quantile linear regression model, and bias correction | ||
| estimation methods due to measurement error. Details about the measurement | ||
| error bias correction methods, see Luan et al. (2023) | ||
| <doi:10.48550/arXiv.2305.12624>, Tekwe et al. (2022) | ||
| <doi:10.1093/biostatistics/kxac017>, Zhang et al. (2023) | ||
| <doi:10.5705/ss.202021.0246>, Tekwe et al. (2019) <doi:10.1002/sim.8179>. | ||
|
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
|
||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
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| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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