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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname GeoTox | ||
| %global packver 0.2.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.2.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Spatiotemporal Mixture Risk Assessment | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 4.4.0 | ||
| Requires: R-core >= 4.4.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-ggplot2 | ||
| BuildRequires: R-CRAN-ggridges | ||
| BuildRequires: R-CRAN-rlang | ||
| BuildRequires: R-CRAN-sf | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-CRAN-stringr | ||
| BuildRequires: R-CRAN-tibble | ||
| BuildRequires: R-CRAN-tidyr | ||
| BuildRequires: R-CRAN-tidyselect | ||
| BuildRequires: R-CRAN-truncnorm | ||
| BuildRequires: R-utils | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-ggplot2 | ||
| Requires: R-CRAN-ggridges | ||
| Requires: R-CRAN-rlang | ||
| Requires: R-CRAN-sf | ||
| Requires: R-stats | ||
| Requires: R-CRAN-stringr | ||
| Requires: R-CRAN-tibble | ||
| Requires: R-CRAN-tidyr | ||
| Requires: R-CRAN-tidyselect | ||
| Requires: R-CRAN-truncnorm | ||
| Requires: R-utils | ||
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| %description | ||
| Connecting spatiotemporal exposure to individual and population-level risk | ||
| via source-to-outcome continuum modeling. The package, methods, and | ||
| case-studies are described in Messier, Reif, and Marvel (2024) | ||
| <doi:10.1101/2024.09.23.24314096> and Eccles et al. (2023) | ||
| <doi:10.1016/j.scitotenv.2022.158905>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,61 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname HMMRel | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Hidden Markov Models for Reliability and Maintenance | ||
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| License: GPL-2 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.5.0 | ||
| Requires: R-core >= 3.5.0 | ||
| BuildArch: noarch | ||
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| %description | ||
| Reliability Analysis and Maintenance Optimization using Hidden Markov | ||
| Models (HMM). The use of HMMs to model the state of a system which is not | ||
| directly observable and instead certain indicators (signals) of the true | ||
| situation are provided via a control system. A hidden model can provide | ||
| key information about the system dependability, such as the reliability of | ||
| the system and related measures. An estimation procedure is implemented | ||
| based on the Baum-Welch algorithm. Classical structures such as K-out-of-N | ||
| systems and Shock models are illustrated. Finally, the maintenance of the | ||
| system is considered in the HMM context and two functions for new | ||
| preventive maintenance strategies are considered. Maintenance efficiency | ||
| is measured in terms of expected cost. Maintenance efficiency is measured | ||
| in terms of expected cost. Methods are described in Gamiz, Limnios, and | ||
| Segovia-Garcia (2023) <doi:10.1016/j.ejor.2022.05.006>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,67 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname OPTeCD | ||
| %global packver 1.0.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Optimal Partial Tetra-Allele Cross Designs | ||
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| License: GPL (>= 2) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
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| %description | ||
| Tetra-allele cross often referred as four-way cross or double cross or | ||
| four-line cross are those type of mating designs in which every cross is | ||
| obtained by mating amongst four inbred lines. A tetra-allele cross can be | ||
| obtained by crossing the resultant of two unrelated diallel crosses. A | ||
| common triallel cross involving four inbred lines A, B, C and D can be | ||
| symbolically represented as (A X B) X (C X D) or (A, B, C, D) or (A B C D) | ||
| etc. Tetra-allele cross can be broadly categorized as Complete | ||
| Tetra-allele Cross (CTaC) and Partial Tetra-allele Crosses (PTaC). | ||
| Rawlings and Cockerham (1962)<doi:10.2307/2527461> firstly introduced and | ||
| gave the method of analysis for tetra-allele cross hybrids using the | ||
| analysis method of single cross hybrids under the assumption of no | ||
| linkage. The set of all possible four-way mating between several genotypes | ||
| (individuals, clones, homozygous lines, etc.) leads to a CTaC. If there | ||
| are N number of inbred lines involved in a CTaC, the the total number of | ||
| crosses, T = N*(N-1)*(N-2)*(N-3)/8. When more number of lines are to be | ||
| considered, the total number of crosses in CTaC also increases. Thus, it | ||
| is almost impossible for the investigator to carry out the experimentation | ||
| with limited available resource material. This situation lies in taking a | ||
| fraction of CTaC with certain underlying properties, known as PTaC. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
|
||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
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||
| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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