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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname CohortGenerator | ||
| %global packver 0.11.1 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.11.1 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Cohort Generation for the OMOP Common Data Model | ||
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| License: Apache License | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.6.0 | ||
| Requires: R-core >= 3.6.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-DatabaseConnector >= 5.0.0 | ||
| BuildRequires: R-CRAN-ParallelLogger >= 3.0.0 | ||
| BuildRequires: R-CRAN-readr >= 2.1.0 | ||
| BuildRequires: R-CRAN-stringi >= 1.7.6 | ||
| BuildRequires: R-CRAN-SqlRender >= 1.11.1 | ||
| BuildRequires: R-CRAN-R6 | ||
| BuildRequires: R-CRAN-checkmate | ||
| BuildRequires: R-CRAN-digest | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-lubridate | ||
| BuildRequires: R-methods | ||
| BuildRequires: R-CRAN-rlang | ||
| BuildRequires: R-CRAN-RJSONIO | ||
| BuildRequires: R-CRAN-jsonlite | ||
| BuildRequires: R-CRAN-ResultModelManager | ||
| BuildRequires: R-CRAN-tibble | ||
| Requires: R-CRAN-DatabaseConnector >= 5.0.0 | ||
| Requires: R-CRAN-ParallelLogger >= 3.0.0 | ||
| Requires: R-CRAN-readr >= 2.1.0 | ||
| Requires: R-CRAN-stringi >= 1.7.6 | ||
| Requires: R-CRAN-SqlRender >= 1.11.1 | ||
| Requires: R-CRAN-R6 | ||
| Requires: R-CRAN-checkmate | ||
| Requires: R-CRAN-digest | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-lubridate | ||
| Requires: R-methods | ||
| Requires: R-CRAN-rlang | ||
| Requires: R-CRAN-RJSONIO | ||
| Requires: R-CRAN-jsonlite | ||
| Requires: R-CRAN-ResultModelManager | ||
| Requires: R-CRAN-tibble | ||
|
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| %description | ||
| Generate cohorts and subsets using an Observational Medical Outcomes | ||
| Partnership (OMOP) Common Data Model (CDM) Database. Cohorts are defined | ||
| using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or SQL compatible with | ||
| 'SqlRender' (<https://github.com/OHDSI/SqlRender>). | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,78 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname PytrendsLongitudinalR | ||
| %global packver 0.1.3 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.3 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Create Longitudinal Google Trends Data | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-lubridate | ||
| BuildRequires: R-CRAN-jsonlite | ||
| BuildRequires: R-CRAN-reticulate | ||
| BuildRequires: R-utils | ||
| Requires: R-CRAN-lubridate | ||
| Requires: R-CRAN-jsonlite | ||
| Requires: R-CRAN-reticulate | ||
| Requires: R-utils | ||
|
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| %description | ||
| 'Google Trends' provides cross-sectional and time-series data on searches, | ||
| but lacks readily available longitudinal data. Researchers, who want to | ||
| create longitudinal 'Google Trends' on their own, face practical | ||
| challenges, such as normalized counts that make it difficult to combine | ||
| cross-sectional and time-series data and limitations in data formats and | ||
| timelines that limit data granularity over extended time periods. This | ||
| package addresses these issues and enables researchers to generate | ||
| longitudinal 'Google Trends' data. This package is built on 'pytrends', a | ||
| Python library that acts as the unofficial 'Google Trends API' to collect | ||
| 'Google Trends' data. As long as the 'Google Trends API', 'pytrends' and | ||
| all their dependencies are working, this package will work. During | ||
| testing, we noticed that for the same input (keyword, topic, data_format, | ||
| timeline), the output index can vary from time to time. Besides, if the | ||
| keyword is not very popular, then the resulting dataset will contain a lot | ||
| of zeros, which will greatly affect the final result. While this package | ||
| has no control over the accuracy or quality of 'Google Trends' data, once | ||
| the data is created, this package coverts it to longitudinal data. In | ||
| addition, the user may encounter a 429 Too Many Requests error when using | ||
| cross_section() and time_series() to collect 'Google Trends' data. This | ||
| error indicates that the user has exceeded the rate limits set by the | ||
| 'Google Trends API'. For more information about the 'Google Trends API' - | ||
| 'pytrends', visit <https://pypi.org/project/pytrends/>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,65 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname RandomWalker | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Generate Random Walks Compatible with the 'tidyverse' | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 4.1.0 | ||
| Requires: R-core >= 4.1.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-tidyr | ||
| BuildRequires: R-CRAN-purrr | ||
| BuildRequires: R-CRAN-rlang | ||
| BuildRequires: R-CRAN-patchwork | ||
| BuildRequires: R-CRAN-NNS | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-tidyr | ||
| Requires: R-CRAN-purrr | ||
| Requires: R-CRAN-rlang | ||
| Requires: R-CRAN-patchwork | ||
| Requires: R-CRAN-NNS | ||
|
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| %description | ||
| Generates random walks of various types by providing a set of functions | ||
| that are compatible with the 'tidyverse'. The functions provided in the | ||
| package make it simple to create random walks with a variety of | ||
| properties, such as how many simulations to run, how many steps to take, | ||
| and the distribution of random walk itself. | ||
|
|
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
|
||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
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| %build | ||
|
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||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,58 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname TLIC | ||
| %global packver 0.1 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: The LIC for T Distribution Regression Analysis | ||
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| License: MIT + file LICENSE | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
| BuildRequires: R-stats | ||
| Requires: R-stats | ||
|
|
||
| %description | ||
| This comprehensive toolkit for T-distribution regression, known as the | ||
| analysis of "TLIC" (T-distribution Linear regression Integrated | ||
| Corrector), adopts ordinary least squares method and assumes that errors | ||
| follow a T-distribution. This approach gives it an advantage when dealing | ||
| with small samples or non-normal error distributions, and can provide more | ||
| robust parameter estimation and hypothesis testing results.The philosophy | ||
| of the package is described in Guo G. (2020) | ||
| <doi:10.1080/02664763.2022.2053949>. | ||
|
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
|
||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
|
||
| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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