sync

specs/R-CRAN-CDsampling.spec

@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  CDsampling
-%global packver   0.1.1
+%global packver   0.1.2
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          0.1.1
+Version:          0.1.2
 Release:          1%{?dist}%{?buildtag}
 Summary:          'CDsampling': Constraint Sampling in Paid Research Studies
 

specs/R-CRAN-CSTE.spec

@@ -0,0 +1,67 @@
+%global __brp_check_rpaths %{nil}
+%global __requires_exclude ^libmpi
+%global packname  CSTE
+%global packver   3.0.0
+%global rlibdir   /usr/local/lib/R/library
+
+Name:             R-CRAN-%{packname}
+Version:          3.0.0
+Release:          1%{?dist}%{?buildtag}
+Summary:          Covariate Specific Treatment Effect (CSTE) Curve
+
+License:          GPL (>= 2)
+URL:              https://cran.r-project.org/package=%{packname}
+Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
+
+
+BuildRequires:    R-devel
+Requires:         R-core
+BuildRequires:    R-CRAN-Rcpp >= 1.0.4
+BuildRequires:    R-CRAN-fda 
+BuildRequires:    R-splines 
+BuildRequires:    R-CRAN-survival 
+BuildRequires:    R-CRAN-locpol 
+BuildRequires:    R-CRAN-dfoptim 
+Requires:         R-CRAN-Rcpp >= 1.0.4
+Requires:         R-CRAN-fda 
+Requires:         R-splines 
+Requires:         R-CRAN-survival 
+Requires:         R-CRAN-locpol 
+Requires:         R-CRAN-dfoptim 
+
+%description
+A uniform statistical inferential tool in making individualized treatment
+decisions, which implements the methods of Ma et al.
+(2017)<DOI:10.1177/0962280214541724> and Guo et al.
+(2021)<DOI:10.1080/01621459.2020.1865167>. It uses a flexible
+semiparametric modeling strategy for heterogeneous treatment effect
+estimation in high-dimensional settings and can gave valid confidence
+bands. Based on it, one can find the subgroups of patients that benefit
+from each treatment, thereby making individualized treatment selection.
+
+%prep
+%setup -q -c -n %{packname}
+
+# fix end of executable files
+find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
+# prevent binary stripping
+[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
+  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
+  sed -i 's@-g0@@g' {} \; || true
+# don't allow local prefix in executable scripts
+find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
+
+%build
+
+%install
+
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+# remove buildroot from installed files
+find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
+
+%files
+%{rlibdir}/%{packname}

specs/R-CRAN-EFAfactors.spec

@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  EFAfactors
-%global packver   1.1.0
+%global packver   1.1.1
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.1.0
+Version:          1.1.1
 Release:          1%{?dist}%{?buildtag}
 Summary:          Determining the Number of Factors in Exploratory Factor Analysis
 

specs/R-CRAN-HMMRel.spec

@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  HMMRel
-%global packver   0.1.0
+%global packver   0.1.1
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          0.1.0
+Version:          0.1.1
 Release:          1%{?dist}%{?buildtag}
 Summary:          Hidden Markov Models for Reliability and Maintenance
 
@@ -29,9 +29,8 @@ based on the Baum-Welch algorithm. Classical structures such as K-out-of-N
 systems and Shock models are illustrated. Finally, the maintenance of the
 system is considered in the HMM context and two functions for new
 preventive maintenance strategies are considered. Maintenance efficiency
-is measured in terms of expected cost.  Maintenance efficiency is measured
-in terms of expected cost. Methods are described in Gamiz, Limnios, and
-Segovia-Garcia (2023) <doi:10.1016/j.ejor.2022.05.006>.
+is measured in terms of expected cost. Methods are described in Gamiz,
+Limnios, and Segovia-Garcia (2023) <doi:10.1016/j.ejor.2022.05.006>.
 
 %prep
 %setup -q -c -n %{packname}

specs/R-CRAN-HelpersMG.spec

@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  HelpersMG
-%global packver   6.2
+%global packver   6.3
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          6.2
+Version:          6.3
 Release:          1%{?dist}%{?buildtag}
 Summary:          Tools for Environmental Analyses, Ecotoxicology and Various R Functions
 

specs/R-CRAN-LFM.spec

@@ -0,0 +1,70 @@
+%global __brp_check_rpaths %{nil}
+%global __requires_exclude ^libmpi
+%global packname  LFM
+%global packver   0.1.0
+%global rlibdir   /usr/local/lib/R/library
+
+Name:             R-CRAN-%{packname}
+Version:          0.1.0
+Release:          1%{?dist}%{?buildtag}
+Summary:          Laplace Factor Model Analysis and Evaluation
+
+License:          MIT + file LICENSE
+URL:              https://cran.r-project.org/package=%{packname}
+Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
+
+
+BuildRequires:    R-devel >= 3.5.0
+Requires:         R-core >= 3.5.0
+BuildArch:        noarch
+BuildRequires:    R-stats 
+BuildRequires:    R-CRAN-FarmTest 
+BuildRequires:    R-CRAN-MASS 
+BuildRequires:    R-CRAN-SOPC 
+BuildRequires:    R-CRAN-LaplacesDemon 
+BuildRequires:    R-CRAN-matrixcalc 
+BuildRequires:    R-CRAN-relliptical 
+Requires:         R-stats 
+Requires:         R-CRAN-FarmTest 
+Requires:         R-CRAN-MASS 
+Requires:         R-CRAN-SOPC 
+Requires:         R-CRAN-LaplacesDemon 
+Requires:         R-CRAN-matrixcalc 
+Requires:         R-CRAN-relliptical 
+
+%description
+Enables the generation of Laplace factor models across diverse Laplace
+distributions and facilitates the application of Sparse Online Principal
+Component (SOPC), Incremental Principal Component (IPC), Parallel
+Principal Component (PPC), Sparse Approximate Principal Component (SAPC),
+Standard Principal Component (SPC), and Farm Test methods to these models.
+Evaluates the efficacy of these methods within the context of Laplace
+factor models by scrutinizing parameter estimation accuracy, mean square
+error, and the degree of sparsity.
+
+%prep
+%setup -q -c -n %{packname}
+
+# fix end of executable files
+find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
+# prevent binary stripping
+[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
+  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
+  sed -i 's@-g0@@g' {} \; || true
+# don't allow local prefix in executable scripts
+find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
+
+%build
+
+%install
+
+mkdir -p %{buildroot}%{rlibdir}
+%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
+test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
+rm -f %{buildroot}%{rlibdir}/R.css
+# remove buildroot from installed files
+find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;
+
+%files
+%{rlibdir}/%{packname}

specs/R-CRAN-LST.spec

@@ -1,10 +1,11 @@
 %global __brp_check_rpaths %{nil}
+%global __requires_exclude ^libmpi
 %global packname  LST
-%global packver   1.1.0
+%global packver   2.0.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.1.0
+Version:          2.0.0
 Release:          1%{?dist}%{?buildtag}
 Summary:          Land Surface Temperature Retrieval for Landsat 8
 
@@ -16,8 +17,8 @@ Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz
 BuildRequires:    R-devel >= 3.5.0
 Requires:         R-core >= 3.5.0
 BuildArch:        noarch
-BuildRequires:    R-CRAN-raster 
-Requires:         R-CRAN-raster 
+BuildRequires:    R-CRAN-terra 
+Requires:         R-CRAN-terra 
 
 %description
 Calculates Land Surface Temperature from Landsat band 10 and 11. Revision
@@ -49,6 +50,8 @@ find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
 # prevent binary stripping
 [ -d %{packname}/src ] && find %{packname}/src -type f -exec \
   sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
+[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
+  sed -i 's@-g0@@g' {} \; || true
 # don't allow local prefix in executable scripts
 find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;
 

specs/R-CRAN-LikertMakeR.spec

@@ -1,13 +1,13 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  LikertMakeR
-%global packver   0.3.0
+%global packver   0.4.0
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          0.3.0
+Version:          0.4.0
 Release:          1%{?dist}%{?buildtag}
-Summary:          Synthesise and Correlate Rating-Scale Data
+Summary:          Synthesise and Correlate Likert Scale and Related Rating-Scale Data
 
 License:          MIT + file LICENSE
 URL:              https://cran.r-project.org/package=%{packname}
@@ -25,11 +25,12 @@ Requires:         R-CRAN-gtools
 Requires:         R-CRAN-Rcpp 
 
 %description
-Synthesise rating-scale data with predefined first & second moments (mean
-& standard deviation) and, optionally, correlate multiple vectors with
-predefined correlation matrix.  Also generate synthetic rating-scale data
-with predefined Cronbach's Alpha, or generate rating-scale items from a
-predefined scale.
+Synthesise Likert scale and related rating-scale data with predefined
+first and second moments (mean and standard deviation), and, optionally,
+correlate multiple vectors using a predefined correlation matrix.
+Additionally, generate synthetic rating-scale items with a predefined
+Cronbach's Alpha, or create rating-scale items based on a predefined
+summated scale.
 
 %prep
 %setup -q -c -n %{packname}

specs/R-CRAN-LongDat.spec

@@ -1,11 +1,11 @@
 %global __brp_check_rpaths %{nil}
 %global __requires_exclude ^libmpi
 %global packname  LongDat
-%global packver   1.1.2
+%global packver   1.1.3
 %global rlibdir   /usr/local/lib/R/library
 
 Name:             R-CRAN-%{packname}
-Version:          1.1.2
+Version:          1.1.3
 Release:          1%{?dist}%{?buildtag}
 Summary:          A Tool for 'Covariate'-Sensitive Longitudinal Analysis on 'omics' Data