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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname AIscreenR | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: AI Screening Tools in R for Systematic Reviewing | ||
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| License: GPL (>= 3) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 4.1.0 | ||
| Requires: R-core >= 4.1.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-dplyr | ||
| BuildRequires: R-CRAN-tibble | ||
| BuildRequires: R-CRAN-httr2 | ||
| BuildRequires: R-CRAN-stringr | ||
| BuildRequires: R-CRAN-furrr | ||
| BuildRequires: R-CRAN-tidyr | ||
| BuildRequires: R-CRAN-tictoc | ||
| BuildRequires: R-CRAN-askpass | ||
| BuildRequires: R-CRAN-curl | ||
| BuildRequires: R-CRAN-purrr | ||
| BuildRequires: R-CRAN-lifecycle | ||
| BuildRequires: R-CRAN-jsonlite | ||
| Requires: R-CRAN-dplyr | ||
| Requires: R-CRAN-tibble | ||
| Requires: R-CRAN-httr2 | ||
| Requires: R-CRAN-stringr | ||
| Requires: R-CRAN-furrr | ||
| Requires: R-CRAN-tidyr | ||
| Requires: R-CRAN-tictoc | ||
| Requires: R-CRAN-askpass | ||
| Requires: R-CRAN-curl | ||
| Requires: R-CRAN-purrr | ||
| Requires: R-CRAN-lifecycle | ||
| Requires: R-CRAN-jsonlite | ||
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| %description | ||
| Provides functions to conduct title and abstract screening in systematic | ||
| reviews using large language models, such as the Generative Pre-trained | ||
| Transformer (GPT) models from 'OpenAI' <https://platform.openai.com/>. | ||
| These functions can enhance the quality of title and abstract screenings | ||
| while reducing the total screening time significantly. In addition, the | ||
| package includes tools for quality assessment of title and abstract | ||
| screenings, as described in Vembye, Christensen, Mølgaard, and Schytt | ||
| (2024) <DOI:10.31219/osf.io/yrhzm>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,64 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname DTSR | ||
| %global packver 0.1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Distributed Trimmed Scores Regression for Handling Missing Data | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.5.0 | ||
| Requires: R-core >= 3.5.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-stats | ||
| BuildRequires: R-CRAN-mvdalab | ||
| BuildRequires: R-CRAN-DMwR2 | ||
| BuildRequires: R-CRAN-cluster | ||
| BuildRequires: R-CRAN-MASS | ||
| Requires: R-stats | ||
| Requires: R-CRAN-mvdalab | ||
| Requires: R-CRAN-DMwR2 | ||
| Requires: R-CRAN-cluster | ||
| Requires: R-CRAN-MASS | ||
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| %description | ||
| Provides functions for handling missing data using Distributed Trimmed | ||
| Scores Regression and other imputation methods. It includes facilities for | ||
| data imputation, evaluation metrics, and clustering analysis. It is | ||
| designed to work in distributed computing environments to handle large | ||
| datasets efficiently. The philosophy of the package is described in Guo G. | ||
| (2024) <doi:10.1080/03610918.2022.2091779>. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
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||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname FGRepo | ||
| %global packver 1.3.2.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.3.2.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Functional Genomics Repository for POST-GWAS Analysis | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.5 | ||
| Requires: R-core >= 3.5 | ||
| BuildArch: noarch | ||
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| %description | ||
| A collection of datasets essential for functional genomic analysis. Gene | ||
| names, gene positions, cytoband information, sourced from Ensembl and | ||
| phenotypes association graph prepared from GWAScatalog are included. Data | ||
| is available in both GRCh37 and 38 builds. These datasets facilitate a | ||
| wide range of genomic studies, including the identification of genetic | ||
| variants, exploration of genomic features, and post-GWAS functional | ||
| analysis. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
|
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||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
|
||
| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname ILSAmerge | ||
| %global packver 1.0.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Merge and Download International Large-Scale Assessments (ILSA) Data | ||
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| License: GPL (>= 3.0) | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel | ||
| Requires: R-core | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-haven | ||
| Requires: R-CRAN-haven | ||
|
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| %description | ||
| Merges and downloads 'SPSS' data from different International Large-Scale | ||
| Assessments (ILSA), including: Trends in International Mathematics and | ||
| Science Study (TIMSS), Progress in International Reading Literacy Study | ||
| (PIRLS), Programme for International Student Assessment (PISA), and | ||
| others. | ||
|
|
||
| %prep | ||
| %setup -q -c -n %{packname} | ||
|
|
||
| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
|
|
||
| %build | ||
|
|
||
| %install | ||
|
|
||
| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
|
|
||
| %files | ||
| %{rlibdir}/%{packname} |
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