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| Original file line number | Diff line number | Diff line change |
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| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname RCNA | ||
| %global packver 1.0 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 1.0 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Robust Copy Number Alteration Detection (RCNA) | ||
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| License: GPL-3 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.5.0 | ||
| Requires: R-core >= 3.5.0 | ||
| BuildArch: noarch | ||
| BuildRequires: R-CRAN-doParallel | ||
| BuildRequires: R-methods | ||
| BuildRequires: R-utils | ||
| BuildRequires: R-CRAN-modeest | ||
| BuildRequires: R-CRAN-data.table | ||
| BuildRequires: R-CRAN-foreach | ||
| BuildRequires: R-CRAN-R.utils | ||
| Requires: R-CRAN-doParallel | ||
| Requires: R-methods | ||
| Requires: R-utils | ||
| Requires: R-CRAN-modeest | ||
| Requires: R-CRAN-data.table | ||
| Requires: R-CRAN-foreach | ||
| Requires: R-CRAN-R.utils | ||
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| %description | ||
| Detects copy number alteration events in targeted exon sequencing data for | ||
| tumor samples without matched normal controls. The advantage of this | ||
| method is that it can be applied to smaller sequencing panels including | ||
| evaluations of exon, transcript, gene, or even user specified genetic | ||
| regions of interest. Functions in the package include steps for GC-content | ||
| correction, calculation of quantile based normal karyotype ranges, and | ||
| calculation of feature score. Cutoffs for "normal" quantile and score are | ||
| user-adjustable. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,62 @@ | ||
| %global __brp_check_rpaths %{nil} | ||
| %global __requires_exclude ^libmpi | ||
| %global packname basicspace | ||
| %global packver 0.25 | ||
| %global rlibdir /usr/local/lib/R/library | ||
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| Name: R-CRAN-%{packname} | ||
| Version: 0.25 | ||
| Release: 1%{?dist}%{?buildtag} | ||
| Summary: Recovering a Basic Space from Issue Scales | ||
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| License: GPL-2 | ||
| URL: https://cran.r-project.org/package=%{packname} | ||
| Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz | ||
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| BuildRequires: R-devel >= 3.0.0 | ||
| Requires: R-core >= 3.0.0 | ||
| BuildRequires: R-tools | ||
| Requires: R-tools | ||
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| %description | ||
| Provides functions to estimate latent dimensions of choice and judgment | ||
| using Aldrich-McKelvey and Blackbox scaling methods, as described in Poole | ||
| et al. (2016, <doi:10.18637/jss.v069.i07>). These techniques allow | ||
| researchers (particularly those analyzing political attitudes, public | ||
| opinion, and legislative behavior) to recover spatial estimates of | ||
| political actors' ideal points and stimuli from issue scale data, | ||
| accounting for perceptual bias, multidimensional spaces, and missing data. | ||
| The package uses singular value decomposition and alternating least | ||
| squares (ALS) procedures to scale self-placement and perceptual data into | ||
| a common latent space for the analysis of ideological or evaluative | ||
| dimensions. Functionality also include tools for assessing model fit, | ||
| handling complex survey data structures, and reproducing simulated | ||
| datasets for methodological validation. | ||
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| %prep | ||
| %setup -q -c -n %{packname} | ||
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| # fix end of executable files | ||
| find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; | ||
| # prevent binary stripping | ||
| [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ | ||
| sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true | ||
| [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ | ||
| sed -i 's@-g0@@g' {} \; || true | ||
| # don't allow local prefix in executable scripts | ||
| find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; | ||
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| %build | ||
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| %install | ||
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| mkdir -p %{buildroot}%{rlibdir} | ||
| %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} | ||
| test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) | ||
| rm -f %{buildroot}%{rlibdir}/R.css | ||
| # remove buildroot from installed files | ||
| find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; | ||
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| %files | ||
| %{rlibdir}/%{packname} |
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