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Enchufa2 committed Oct 1, 2024
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62 changes: 62 additions & 0 deletions specs/R-CRAN-Argentum.spec
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%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname Argentum
%global packver 0.5.1
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 0.5.1
Release: 1%{?dist}%{?buildtag}
Summary: Access and Import WMS and WFS Data from Argentine Organizations

License: MIT + file LICENSE
URL: https://cran.r-project.org/package=%{packname}
Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires: R-devel
Requires: R-core
BuildArch: noarch
BuildRequires: R-CRAN-httr
BuildRequires: R-CRAN-xml2
BuildRequires: R-CRAN-sf
BuildRequires: R-CRAN-readr
Requires: R-CRAN-httr
Requires: R-CRAN-xml2
Requires: R-CRAN-sf
Requires: R-CRAN-readr

%description
Provides functions to retrieve information from Web Feature Service (WFS)
and Web Map Service (WMS) layers from various Argentine organizations and
import them into R for further analysis. WFS and WMS are standardized
protocols for serving georeferenced map data over the internet. For more
information on these services, see <https://www.ogc.org/standard/wfs/> and
<https://www.ogc.org/standard/wms/>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}
4 changes: 2 additions & 2 deletions specs/R-CRAN-BGVAR.spec
Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname BGVAR
%global packver 2.5.7
%global packver 2.5.8
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 2.5.7
Version: 2.5.8
Release: 1%{?dist}%{?buildtag}
Summary: Bayesian Global Vector Autoregressions

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4 changes: 2 additions & 2 deletions specs/R-CRAN-CholWishart.spec
Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname CholWishart
%global packver 1.1.2.1
%global packver 1.1.4
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 1.1.2.1
Version: 1.1.4
Release: 1%{?dist}%{?buildtag}
Summary: Cholesky Decomposition of the Wishart Distribution

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4 changes: 2 additions & 2 deletions specs/R-CRAN-CohortGenerator.spec
Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname CohortGenerator
%global packver 0.11.1
%global packver 0.11.2
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 0.11.1
Version: 0.11.2
Release: 1%{?dist}%{?buildtag}
Summary: Cohort Generation for the OMOP Common Data Model

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4 changes: 2 additions & 2 deletions specs/R-CRAN-EmpiricalCalibration.spec
Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname EmpiricalCalibration
%global packver 3.1.2
%global packver 3.1.3
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 3.1.2
Version: 3.1.3
Release: 1%{?dist}%{?buildtag}
Summary: Routines for Performing Empirical Calibration of Observational Study Estimates

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54 changes: 54 additions & 0 deletions specs/R-CRAN-IGC.CSM.spec
Original file line number Diff line number Diff line change
@@ -0,0 +1,54 @@
%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname IGC.CSM
%global packver 0.2.0
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 0.2.0
Release: 1%{?dist}%{?buildtag}
Summary: Simulate Impact of Different Urban Policies Through a General Equilibrium Model

License: MIT + file LICENSE
URL: https://cran.r-project.org/package=%{packname}
Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires: R-devel
Requires: R-core
BuildArch: noarch

%description
Develops a General Equilibrium (GE) Model, which estimates key variables
such as wages, the number of residents and workers, the prices of the
floor space, and its distribution between commercial and residential use,
as in Ahlfeldt et al., (2015) <doi:10.3982/ECTA10876>. By doing so, the
model allows understanding the economic influence of different urban
policies.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}
8 changes: 4 additions & 4 deletions specs/R-CRAN-MAMS.spec
Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname MAMS
%global packver 2.0.2
%global packver 3.0.0
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 2.0.2
Version: 3.0.0
Release: 1%{?dist}%{?buildtag}
Summary: Designing Multi-Arm Multi-Stage Studies

Expand All @@ -20,12 +20,12 @@ BuildRequires: R-CRAN-mvtnorm
BuildRequires: R-methods
BuildRequires: R-CRAN-future
BuildRequires: R-CRAN-future.apply
BuildRequires: R-CRAN-knitr
BuildRequires: R-CRAN-cli
Requires: R-CRAN-mvtnorm
Requires: R-methods
Requires: R-CRAN-future
Requires: R-CRAN-future.apply
Requires: R-CRAN-knitr
Requires: R-CRAN-cli

%description
Designing multi-arm multi-stage studies with (asymptotically) normal
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94 changes: 94 additions & 0 deletions specs/R-CRAN-MethodOpt.spec
Original file line number Diff line number Diff line change
@@ -0,0 +1,94 @@
%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname MethodOpt
%global packver 1.0.0
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 1.0.0
Release: 1%{?dist}%{?buildtag}
Summary: Advanced Method Optimization for Spectra-Generating Sampling and Analysis Instrumentation

License: GPL (>= 3)
URL: https://cran.r-project.org/package=%{packname}
Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires: R-devel
Requires: R-core
BuildArch: noarch
BuildRequires: R-stats >= 4.3.2
BuildRequires: R-CRAN-gtools >= 3.9.5
BuildRequires: R-CRAN-ggplot2 >= 3.4.4
BuildRequires: R-CRAN-tibble >= 3.2.1
BuildRequires: R-CRAN-shinyalert >= 3.0.0
BuildRequires: R-CRAN-FrF2 >= 2.3.3
BuildRequires: R-CRAN-zip >= 2.3.0
BuildRequires: R-CRAN-shinyjs >= 2.1.0
BuildRequires: R-CRAN-magrittr >= 2.0.3
BuildRequires: R-CRAN-zoo >= 1.8.12
BuildRequires: R-CRAN-shiny >= 1.7.5.1
BuildRequires: R-CRAN-glue >= 1.6.2
BuildRequires: R-CRAN-dplyr >= 1.1.3
BuildRequires: R-CRAN-rlang >= 1.1.2
BuildRequires: R-CRAN-purrr >= 1.0.2
BuildRequires: R-CRAN-shinyBS >= 0.61.1
BuildRequires: R-CRAN-htmltools >= 0.5.8.1
BuildRequires: R-CRAN-shinyFeedback >= 0.4.0
BuildRequires: R-CRAN-DT >= 0.30
BuildRequires: R-CRAN-DoE.wrapper >= 0.12
Requires: R-stats >= 4.3.2
Requires: R-CRAN-gtools >= 3.9.5
Requires: R-CRAN-ggplot2 >= 3.4.4
Requires: R-CRAN-tibble >= 3.2.1
Requires: R-CRAN-shinyalert >= 3.0.0
Requires: R-CRAN-FrF2 >= 2.3.3
Requires: R-CRAN-zip >= 2.3.0
Requires: R-CRAN-shinyjs >= 2.1.0
Requires: R-CRAN-magrittr >= 2.0.3
Requires: R-CRAN-zoo >= 1.8.12
Requires: R-CRAN-shiny >= 1.7.5.1
Requires: R-CRAN-glue >= 1.6.2
Requires: R-CRAN-dplyr >= 1.1.3
Requires: R-CRAN-rlang >= 1.1.2
Requires: R-CRAN-purrr >= 1.0.2
Requires: R-CRAN-shinyBS >= 0.61.1
Requires: R-CRAN-htmltools >= 0.5.8.1
Requires: R-CRAN-shinyFeedback >= 0.4.0
Requires: R-CRAN-DT >= 0.30
Requires: R-CRAN-DoE.wrapper >= 0.12

%description
A graphical user interface to apply an advanced method optimization
algorithm to various sampling and analysis instruments. This includes
generating experimental designs, uploading and viewing data, and
performing various analyses to determine the optimal method. Details of
the techniques used in this package are published in Gamble, Granger, &
Mannion (2024) <doi:10.1021/acs.analchem.3c05763>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}
7 changes: 5 additions & 2 deletions specs/R-CRAN-MixMatrix.spec
Original file line number Diff line number Diff line change
@@ -1,10 +1,11 @@
%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname MixMatrix
%global packver 0.2.6
%global packver 0.2.8
%global rlibdir /usr/local/lib/R/library

Name: R-CRAN-%{packname}
Version: 0.2.6
Version: 0.2.8
Release: 1%{?dist}%{?buildtag}
Summary: Classification with Matrix Variate Normal and t Distributions

Expand All @@ -18,10 +19,12 @@ Requires: R-core >= 3.5.0
BuildRequires: R-stats
BuildRequires: R-CRAN-CholWishart
BuildRequires: R-CRAN-Rcpp
BuildRequires: R-CRAN-glue
BuildRequires: R-CRAN-RcppArmadillo
Requires: R-stats
Requires: R-CRAN-CholWishart
Requires: R-CRAN-Rcpp
Requires: R-CRAN-glue

%description
Provides sampling and density functions for matrix variate normal, t, and
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