Release 1.0.7

This release ensures compatibility with the upcoming COPASI 287 release.

Release 1.0.6

This release fixes an issue, when encountering parameter files without names. Additionally address some pandas future warnings.

Release 1.0.5

This release fixes a compatibility issue with libsbml (when compiled with SWIG 4).

Release 1.0.4

This release adds support for transformed observables. For this both the observable formula and the measurement data on import will be transformed. Additionally we try to resolve the noise parameters and import them as weights for the experimental data.

Release 1.0.3

This release fixes an issue, where sometimes parameter values not to be estimated were not correctly assigned. Additionally this fixes issue #2.

COPASI PEtab importer 1.0.2

This release fixes an issue where sometimes values would not be correctly set, when they were of a numpy datatype.

COPASI PEtab import 1.0.1

This release fixes an issue, where the gui was always required. The gui dependencies however are only installed when the extra [gui] was specified for installation. This release catches the import error.

copasi_petab_importer 1.0.0

First release for pypi, all code placed into submodule. After installation the two shell commands:

• copasi_petab_import: to convert a petab problem into a COPASI file from the command line
• copasi_petab_gui: to launch the graphical user interface

PE tab exports from PEtab 2019

The files attached here were generated using the PEtab format as it was during the Berlin hackathon 2019. Attached are two archives. One including all the COPASI files + exported data files. The second one combining both as combine archives, including SBML, COPASI files + data.

the final file (python-petab-importer-petab-2019.zip) includes the source code, as well as the benchmark models in the PEtab hackathon format of 2019.