Update build_docs.yaml

.github/workflows/build_docs.yaml

@@ -38,15 +38,15 @@ jobs:
 
     - name: Generate Documentation
       shell: bash -l {0} 
-      run: pdoc synaptic_reconstruction -o doc/html
+      run: pdoc -o doc/
 
     - name: Verify Documentation Output
-      run: ls -la doc/html
+      run: ls -la doc/
 
     - name: Upload Documentation Artifact
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-pages-artifact@v4
       with:
-        name: documentation
+        # name: documentation
         path: doc/
 
   deploy:
@@ -60,22 +60,14 @@ jobs:
       name: github-pages
       url: ${{ steps.deployment.outputs.page_url }}
     steps:
-      - name: Download Documentation Artifact
-        uses: actions/download-artifact@v4
-        with:
-          name: documentation
-          path: .
-      - name: Copy pdoc HTML to root
-        run: |
-          ls -la .
-          cp -r documentation/* .  # Copy HTML content to root directory
-
-      - name: Copy markdown files to root
-        run: |
-          cp doc/*.md .  # Copy markdown files from doc/ to root directory
+      # - name: Download Documentation Artifact
+      #   uses: actions/download-artifact@v4
+      #   with:
+      #     name: documentation
+      #     path: .
 
       - name: Deploy to GiHub Pages
         uses: actions/deploy-pages@v4
-        with: 
-          artifact_name: documentation
+        # with: 
+        #   artifact_name: documentation