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Add materials for hands-on workshops #742

Merged
merged 12 commits into from
Oct 18, 2024
Merged

Add materials for hands-on workshops #742

merged 12 commits into from
Oct 18, 2024

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anwai98
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@anwai98 anwai98 commented Oct 17, 2024

I've created a first draft of the materials we discussed today. There are a few things I still need to finish:

  • Finetuning for cell segmentation with HPA dataset
    • Add notebook (WIP)
    • Add python script (TODO - I'll just translate the notebook to the script)
  • Finalize workshop doc for adding hints to:
    • Installation (TODO)
    • 2d annotator (WIP)
    • 3d annotator (WIP)
    • Image series annotator (WIP)
  • Add helpers to arguments exposed via python scripts.

cc: @constantinpape

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@anwai98
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anwai98 commented Oct 18, 2024

Btw, timm's latest release is in, and the CIs work now! 🥳

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anwai98 commented Oct 18, 2024

Hi @constantinpape,

The parts for downloading datasets, precomputed embeddings and testing them in our annotators is ready to test now. (cc: @sushmita-nair @lufre1)

I am finalizing the finetuning notebooks + script, just a few parts left and then this should be done as well!

@anwai98 anwai98 marked this pull request as ready for review October 18, 2024 12:54
@constantinpape constantinpape merged commit 69f3c01 into dev Oct 18, 2024
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@anwai98 anwai98 deleted the workshops branch October 29, 2024 16:15
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2 participants