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cobeylab

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  1. Rt_estimation Rt_estimation Public

    Code to test Rt estimates against synthetic data

    R 16 15

  2. pyembedding pyembedding Public

    Python implementation of nonlinear embedding methods

    Python 10 6

  3. Influenza-immune-dynamics Influenza-immune-dynamics Public

    Code to accompany the manuscript "Age-specific differences in the dynamics of protective immunity to influenza"

    R 7 3

  4. epidemic-deconvolution epidemic-deconvolution Public

    Example code for deconvolving epidemic time series

    R 5 2

  5. antigen-phylogeography antigen-phylogeography Public

    Java 4 1

  6. HPV-model HPV-model Public

    R 3 3

Repositories

Showing 10 of 44 repositories
  • population_immunity_predicting_flu Public
    cobeylab/population_immunity_predicting_flu’s past year of commit activity
    R 0 0 0 0 Updated Oct 2, 2024
  • lab_handbook Public
    cobeylab/lab_handbook’s past year of commit activity
    TeX 1 CC0-1.0 2 0 2 Updated Jul 31, 2024
  • OAS-strain-replacement Public

    Code for reproducing results in "A speed limit on serial strain replacement from Original Antigenic Sin"

    cobeylab/OAS-strain-replacement’s past year of commit activity
    Mathematica 2 MIT 0 0 0 Updated May 29, 2024
  • FluVE_repeatvac_public Public
    cobeylab/FluVE_repeatvac_public’s past year of commit activity
    HTML 3 0 0 0 Updated Apr 10, 2024
  • flu_strain_compare Public

    Visualizing mutations and PNGS changes between two strains

    cobeylab/flu_strain_compare’s past year of commit activity
    Python 2 0 1 2 Updated Jan 18, 2024
  • hong_kong_publc_data_site Public

    Hong Kong flu data

    cobeylab/hong_kong_publc_data_site’s past year of commit activity
    R 0 0 0 0 Updated Aug 16, 2023
  • v_gene_selection Public

    V gene usage in mice infected with flu.

    cobeylab/v_gene_selection’s past year of commit activity
    R 1 0 0 0 Updated Jul 5, 2023
  • Nextstrain-on-HPC Public

    How to install and run Nextstrain in HPC environments

    cobeylab/Nextstrain-on-HPC’s past year of commit activity
    1 0 0 0 Updated Jan 10, 2023
  • digital-repeatability Public

    Materials for digital repeatability training

    cobeylab/digital-repeatability’s past year of commit activity
    0 0 0 0 Updated Dec 21, 2022
  • imprinting Public

    Code to reconstruct influenza imprinting probabilities from 1918 to present

    cobeylab/imprinting’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 17, 2022
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