Force a python version compatible with conda version #243
Workflow file for this run
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| name: conda_build | |
| on: | |
| push: | |
| branches: [master, development, fix_CI] | |
| pull_request: | |
| branches: [master, development, fix_CI] | |
| env: | |
| CACHE_NUMBER: 0 | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| label: linux-64 | |
| prefix: /usr/share/miniconda3/envs/bc_builds | |
| - os: macos-13 | |
| label: osx-64 | |
| prefix: /Users/runner/miniconda3/envs/bc_builds | |
| name: ${{ matrix.label }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Miniforge | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Miniforge3 | |
| miniforge-version: latest | |
| activate-environment: bc_builds | |
| #conda-version: "23.5.2" | |
| use-mamba: true | |
| - name: Ensure Python 3.11 is installed in base environment | |
| run: mamba install --name base python=3.11 | |
| - name: Update Conda and Mamba | |
| run: | | |
| mamba install --name base conda=23.5.2 | |
| - name: Update beyondcell environment | |
| run: mamba update -n bc_builds -f helpers/mambabuild.yml | |
| - name: Install beyondcell package | |
| shell: bash -l {0} | |
| run: | | |
| conda activate bc_builds | |
| mamba install boa -y | |
| mamba mambabuild ./.github/workflows/r-beyondcell | |
| mamba install --use-local r-beyondcell | |
| - name: Test beyondcell | |
| shell: bash -l {0} | |
| run: | | |
| conda activate bc_builds | |
| mamba install -c conda-forge r-hdf5r | |
| mamba install -c conda-forge r-devtools | |
| Rscript --vanilla ./.github/workflows/helpers/call_tests.R | |
| - name: Archive package test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-report | |
| path: test_summary.txt | |
| - name: Archive beyondcell package for GNU/Linux | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Linux_r-beyondcell-v2.2.1 | |
| path: /usr/share/miniconda3/envs/bc_builds/conda-bld/linux-64/r-beyondcell-2.2.1-r43_0.tar.bz2 | |
| - name: Archive beyondcell package for macOS | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: macOS_r-beyondcell-v2.2.1 | |
| path: /Users/runner/miniconda3/envs/bc_builds/conda-bld/osx-64/r-beyondcell-2.2.1-r43_0.tar.bz2 |